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Alex A. Pollen
Researcher at University of California, San Francisco
Publications - 73
Citations - 10731
Alex A. Pollen is an academic researcher from University of California, San Francisco. The author has contributed to research in topics: Gene & Biology. The author has an hindex of 29, co-authored 59 publications receiving 8502 citations. Previous affiliations of Alex A. Pollen include Harvard University & Stanford University.
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Journal ArticleDOI
The genomic basis of adaptive evolution in threespine sticklebacks
Felicity C. Jones,Manfred Grabherr,Manfred Grabherr,Yingguang Frank Chan,Pamela Russell,Evan Mauceli,Evan Mauceli,Jeremy Johnson,Ross Swofford,Mono Pirun,Mono Pirun,Michael C. Zody,Simon D. M. White,Ewan Birney,Stephen M. J. Searle,Jeremy Schmutz,Jane Grimwood,Mark Dickson,Richard M. Myers,Craig Miller,Craig Miller,Brian R. Summers,Anne K. Knecht,Shannon D. Brady,Haili Zhang,Alex A. Pollen,Timothy R. Howes,Chris T. Amemiya,Eric S. Lander,Federica Di Palma,Kerstin Lindblad-Toh,Kerstin Lindblad-Toh,David M. Kingsley,David M. Kingsley +33 more
TL;DR: A high-quality reference genome assembly for threespine stickleback fish is developed and it is indicated that reuse of globally shared standing genetic variation has an important role in repeated evolution of distinct marine and freshwater sticklebacks, and in the maintenance of divergent ecotypes during early stages of reproductive isolation.
The genomic basis of adaptive evolution in threespine sticklebacks
Felicity C. Jones,Manfred Grabherr,Yingguang Frank Chan,Pamela Russell,Evan Mauceli,Jeremy A. Johnson,Ross Swofford,Mono Pirun,Michael C. Zody,Simon D. M. White,Ewan Birney,Stephen M. J. Searle,Jeremy Schmutz,Jane Grimwood,Mark Dickson,Richard M. Myers,Craig Miller,Brian R. Summers,Anne K. Knecht,Shannon D. Brady,Haili Zhang,Alex A. Pollen,Timothy R. Howes,Chris T. Amemiya,Jen Baldwin,Toby Bloom,David B. Jaffe,Robert Nicol,Jane E. Wilkinson,Eric S. Lander,Federica Di Palma,Kerstin Lindblad-Toh,David M. Kingsley +32 more
Journal ArticleDOI
Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex.
Alex A. Pollen,Tomasz J. Nowakowski,Joe Shuga,Xiaohui Wang,Anne A. Leyrat,Jan H. Lui,Nianzhen Li,Lukasz Szpankowski,Brian Fowler,Peilin Chen,Naveen Ramalingam,Gang Sun,Myo Thu,Michael C Norris,Ronald Lebofsky,Dominique Toppani,Darnell W Kemp,Michael Wong,Barry Clerkson,Brittnee N. Jones,Shiquan Wu,Lawrence Knutsson,Beatriz Alvarado,Jing Wang,Lesley Suzanne Weaver,Andrew May,Robert C. Jones,Marc A. Unger,Arnold R. Kriegstein,Jay A. A. West +29 more
TL;DR: This paper identifies diverse cell types, including multiple progenitor and neuronal subtypes, and identifies EGR1 and FOS as previously unreported candidate targets of Notch signaling in human but not mouse radial glia by microfluidic single-cell capture and low-coverage sequencing of many cells.
Journal ArticleDOI
Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex
Tomasz J. Nowakowski,Aparna Bhaduri,Alex A. Pollen,Beatriz Alvarado,Mohammed A. Mostajo-Radji,Elizabeth Di Lullo,Maximilian Haeussler,Carmen Sandoval-Espinosa,Siyuan John Liu,Dmitry Velmeshev,Johain Ryad Ounadjela,Joe Shuga,Xiaohui Wang,Daniel A. Lim,Jay A. A. West,Anne A. Leyrat,W. James Kent,Arnold R. Kriegstein +17 more
TL;DR: The results support a mixed model of topographical, typological, and temporal hierarchies governing cell-type diversity in the developing human telencephalon, including distinct excitatory lineages emerging in rostral and caudal cerebral cortex.
Journal ArticleDOI
Molecular Identity of Human Outer Radial Glia during Cortical Development
Alex A. Pollen,Tomasz J. Nowakowski,Jiadong Chen,Hanna Retallack,Carmen Sandoval-Espinosa,Cory R. Nicholas,Joe Shuga,Siyuan John Liu,Michael C. Oldham,Aaron Diaz,Daniel A. Lim,Anne A. Leyrat,Jay A. A. West,Arnold R. Kriegstein +13 more
TL;DR: It is suggested that outer radial glia directly support the subventricular niche through local production of growth factors, potentiation of growth factor signals by extracellular matrix proteins, and activation of self-renewal pathways, thereby enabling the developmental and evolutionary expansion of the human neocortex.