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Arjen G. C. L. Speksnijder

Researcher at Naturalis

Publications -  58
Citations -  2637

Arjen G. C. L. Speksnijder is an academic researcher from Naturalis. The author has contributed to research in topics: Chlamydia trachomatis & Population. The author has an hindex of 28, co-authored 56 publications receiving 2418 citations. Previous affiliations of Arjen G. C. L. Speksnijder include Wageningen University and Research Centre & Maastricht University.

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Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

TL;DR: A detailed phylogeny based on whole-genome sequencing of representative strains of C. trachomatis from both trachoma and lymphogranuloma venereum biovars from temporally and geographically diverse sources shows that predicting phylogenetic structure using ompA, which is traditionally used to classify Chlamydia, is misleading because extensive recombination in this region masks any true relationships present.
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Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences

TL;DR: A defined template mixture of seven closely related 16S-rDNA clones was used in a PCR-cloning experiment to assess and track sources of artifactual sequence variation in 16S rDNA clone libraries and may partially explain the high degree of microheterogeneity typical of sequence clusters detected in environmental clone libraries.
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DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe

Florian Leese, +100 more
TL;DR: The goal of this Action is to nucleate a group of researchers across disciplines with the task to identify gold-standard genomic tools and novel ecogenomic indices for routine application in biodiversity assessments of European fresh- and marine water bodies.
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Spatiotemporal Stability of an Ammonia-Oxidizing Community in a Nitrogen-Saturated Forest Soil.

TL;DR: It is suggested that environmental heterogeneity affecting ammonia oxidation numbers and activity, and not ammonia oxidizer community structure, is chiefly responsible for spatial and temporal variation in nitrate production in these acid forest soils.