A
Arjen G. C. L. Speksnijder
Researcher at Naturalis
Publications - 58
Citations - 2637
Arjen G. C. L. Speksnijder is an academic researcher from Naturalis. The author has contributed to research in topics: Chlamydia trachomatis & Population. The author has an hindex of 28, co-authored 56 publications receiving 2418 citations. Previous affiliations of Arjen G. C. L. Speksnijder include Wageningen University and Research Centre & Maastricht University.
Papers
More filters
Journal ArticleDOI
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing
Simon R. Harris,Ian N. Clarke,Helena M. B. Seth-Smith,Anthony W. Solomon,Lesley T. Cutcliffe,Peter Marsh,Rachel J. Skilton,Martin J. Holland,David Mabey,Rosanna W. Peeling,David A. Lewis,David A. Lewis,David A. Lewis,Brian G. Spratt,Magnus Unemo,Kenneth Persson,Carina Bjartling,Robert C. Brunham,Henry J. C. de Vries,Servaas A. Morré,Servaas A. Morré,Arjen G. C. L. Speksnijder,Cécile Bébéar,Cécile Bébéar,Maïté Clerc,Maïté Clerc,Bertille de Barbeyrac,Bertille de Barbeyrac,Julian Parkhill,Nicholas R. Thomson +29 more
TL;DR: A detailed phylogeny based on whole-genome sequencing of representative strains of C. trachomatis from both trachoma and lymphogranuloma venereum biovars from temporally and geographically diverse sources shows that predicting phylogenetic structure using ompA, which is traditionally used to classify Chlamydia, is misleading because extensive recombination in this region masks any true relationships present.
Journal ArticleDOI
Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences
Arjen G. C. L. Speksnijder,George A. Kowalchuk,Sander De Jong,Elizabeth Kline,John R. Stephen,Hendrikus J. Laanbroek +5 more
TL;DR: A defined template mixture of seven closely related 16S-rDNA clones was used in a PCR-cloning experiment to assess and track sources of artifactual sequence variation in 16S rDNA clone libraries and may partially explain the high degree of microheterogeneity typical of sequence clusters detected in environmental clone libraries.
Journal ArticleDOI
Genetic Diversity of the Biofilm Covering Montacuta ferruginosa (Mollusca, Bivalvia) as Evaluated by Denaturing Gradient Gel Electrophoresis Analysis and Cloning of PCR-Amplified Gene Fragments Coding for 16S rRNA†
TL;DR: It is inferred from the results that some of the biofilm bacteria could play a role in the mineral formation processes.
Journal ArticleDOI
DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
Florian Leese,Florian Altermatt,Agnès Bouchez,Torbjørn Ekrem,Daniel Hering,Kristian Meissner,Patricia Mergen,Jan Pawlowski,Jeremy J. Piggott,Frédéric Rimet,Dirk Steinke,Pierre Taberlet,Alexander M. Weigand,Kessy Abarenkov,Pedro Beja,Lieven Bervoets,Snaedis H. Bjornsdottir,Pieter Boets,Angela Boggero,Atle M. Bones,Ángel Borja,Kat Bruce,Vojislava Bursić,Jens Carlsson,Fedor Čiampor,Zuzana Ciamporova-Zatovicova,Eric Coissac,Filipe O. Costa,Marieta Costache,Simon Creer,Zoltán Csabai,Kristy Deiner,Ángel DelValls,Stina Drakare,Sofia Alexandra Ferreira Duarte,Tina Elersek,Stefano Fazi,Cene Fišer,Jean-François Flot,Vera G. Fonseca,Diego Fontaneto,Michael Grabowski,Wolfram Graf,Jóhannes Guðbrandsson,Micaela Hellström,Yaron Hershkovitz,Peter M. Hollingsworth,Bella Japoshvili,John Jones,Maria Kahlert,Belma Kalamujić Stroil,Panagiotis Kasapidis,Martyn Kelly,Mary Kelly-Quinn,Emre Keskin,Urmas Kõljalg,Zrinka Ljubešić,Irena Maček,Elvira Mächler,Andrew R. Mahon,Marketa Marečková,Maja Mejdandzic,Georgina Mircheva,Matteo Montagna,Christian Moritz,Vallo Mulk,Andreja Naumoski,Ion Năvodaru,Judit Padisák,Snæbjörn Pálsson,Kristel Panksep,Lyubomir Penev,Adam Petrusek,Martin Pfannkuchen,Craig R. Primmer,Baruch Rinkevich,Ana Rotter,Astrid Schmidt-Kloiber,Pedro Segurado,Arjen G. C. L. Speksnijder,Pavel Stoev,Malin Strand,Sigitas Šulčius,Per Sundberg,Michael Traugott,Costas S. Tsigenopoulos,Xavier Turon,Alice Valentini,Berry van der Hoorn,Gábor Várbíró,Marlen Vasquez Hadjilyra,J.R. Viguri,Irma Vitonytė,Alfried P. Vogler,Trude Vrålstad,Wolfgang Wägele,Roman Wenne,Anne Winding,Guy Woodward,Bojana Zegura,Jonas Zimmermann +100 more
TL;DR: The goal of this Action is to nucleate a group of researchers across disciplines with the task to identify gold-standard genomic tools and novel ecogenomic indices for routine application in biodiversity assessments of European fresh- and marine water bodies.
Journal ArticleDOI
Spatiotemporal Stability of an Ammonia-Oxidizing Community in a Nitrogen-Saturated Forest Soil.
Anniet M. Laverman,Arjen G. C. L. Speksnijder,Martin Braster,George A. Kowalchuk,Herman A. Verhoef,H. W. van Verseveld +5 more
TL;DR: It is suggested that environmental heterogeneity affecting ammonia oxidation numbers and activity, and not ammonia oxidizer community structure, is chiefly responsible for spatial and temporal variation in nitrate production in these acid forest soils.