B
Bertrand Néron
Researcher at Pasteur Institute
Publications - 23
Citations - 2416
Bertrand Néron is an academic researcher from Pasteur Institute. The author has contributed to research in topics: Bacterial genome size & Integron. The author has an hindex of 12, co-authored 21 publications receiving 1680 citations. Previous affiliations of Bertrand Néron include Centre national de la recherche scientifique & Paris Diderot University.
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Journal ArticleDOI
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.
David Couvin,Aude Bernheim,Aude Bernheim,Claire Toffano-Nioche,Marie Touchon,Marie Touchon,Juraj Michalik,Bertrand Néron,Eduardo P. C. Rocha,Eduardo P. C. Rocha,Gilles Vergnaud,Daniel Gautheret,Christine Pourcel +12 more
TL;DR: The program includes an improved CRISPR array detection tool facilitating expert validation based on a rating system, prediction ofCRISPR orientation and a Cas protein detection and typing tool updated to match the latest classification scheme of these systems.
Journal ArticleDOI
Mobyle: a new full web bioinformatics framework
Bertrand Néron,Hervé Ménager,Corinne Maufrais,Nicolas Joly,Julien Maupetit,Sébastien Letort,Sébastien Carrère,Pierre Tufféry,Catherine Letondal +8 more
TL;DR: The Mobyle system is designed to provide a flexible and usable Web environment for defining and running bioinformatics analyses that embeds simple yet powerful data management features that allow the user to reproduce analyses and to combine tools using a hierarchical typing system.
Journal ArticleDOI
Identification of protein secretion systems in bacterial genomes
Sophie S. Abby,Jean Cury,Jean Cury,Julien Guglielmini,Julien Guglielmini,Bertrand Néron,Marie Touchon,Marie Touchon,Eduardo P. C. Rocha,Eduardo P. C. Rocha +9 more
TL;DR: Online and standalone computational tools to accurately predict protein secretion systems and related appendages in bacteria with LPS-containing outer membranes are built and can be fully customized, which should facilitate the identification of novel systems.
Journal ArticleDOI
MacSyFinder: a program to mine genomes for molecular systems with an application to CRISPR-Cas systems.
TL;DR: MacSyFinder as discussed by the authors is a framework to model the properties of molecular systems (cellular machinery or pathway) including their components, evolutionary associations with other systems and genetic architecture.
Journal ArticleDOI
Identification and analysis of integrons and cassette arrays in bacterial genomes
TL;DR: A program is made to identify integrons with high accuracy and sensitivity and might represent an evolutionary step between the acquisition of genes within integrons and their stabilization in the new genome.