B
Bruno Aranda
Researcher at European Bioinformatics Institute
Publications - 17
Citations - 5765
Bruno Aranda is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Data curation & Interoperability. The author has an hindex of 14, co-authored 17 publications receiving 5194 citations. Previous affiliations of Bruno Aranda include University of British Columbia.
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Journal ArticleDOI
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.
Sandra Orchard,Mais G. Ammari,Bruno Aranda,Lionel Breuza,Leonardo Briganti,Fiona Broackes-Carter,Nancy H. Campbell,Gayatri Chavali,Carol Chen,Noemi del-Toro,Margaret Duesbury,Marine Dumousseau,Eugenia Galeota,Ursula Hinz,Marta Iannuccelli,Sruthi Jagannathan,Rafael C. Jimenez,Jyoti Khadake,Astrid Lagreid,Luana Licata,Ruth C. Lovering,Birgit H M Meldal,Anna N. Melidoni,Mila Milagros,Daniele Peluso,Livia Perfetto,Pablo Porras,Arathi Raghunath,Sylvie Ricard-Blum,Bernd Roechert,Andre Stutz,Michael Tognolli,Kim Van Roey,Gianni Cesareni,Henning Hermjakob +34 more
TL;DR: All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset.
Journal ArticleDOI
The IntAct molecular interaction database in 2012
Samuel Kerrien,Bruno Aranda,Lionel Breuza,Alan Bridge,Fiona Broackes-Carter,Carol Chen,Margaret Duesbury,Marine Dumousseau,M Feuermann,Ursula Hinz,Christine Jandrasits,Rafael C. Jimenez,Jyoti Khadake,Usha Mahadevan,Patrick Masson,Ivo Pedruzzi,Eric Pfeiffenberger,Pablo Porras,Arathi Raghunath,Bernd Roechert,Sandra Orchard,Henning Hermjakob +21 more
TL;DR: Two levels of curation are now available within the IntAct database, with both IMEx-level annotation and less detailed MIMIx-compatible entries currently supported.
Journal ArticleDOI
IntAct—open source resource for molecular interaction data
Samuel Kerrien,Yasmin Alam-Faruque,Bruno Aranda,I. Bancarz,Alan Bridge,C. Derow,Emily Dimmer,Marc Feuermann,A. Friedrichsen,Rachael P. Huntley,C. Kohler,Jyoti Khadake,Catherine Leroy,A. Liban,C. Lieftink,Luisa Montecchi-Palazzi,Sandra Orchard,Judith Risse,Karine Robbe,Bernd Roechert,David Thorneycroft,Y. Zhang,Rolf Apweiler,Henning Hermjakob +23 more
TL;DR: IntAct is an open source database and software suite for modeling, storing and analyzing molecular interaction data that features over 126 000 binary interactions extracted from over 2100 scientific publications and makes extensive use of controlled vocabularies.
Journal ArticleDOI
The IntAct molecular interaction database in 2010
Bruno Aranda,P. Achuthan,Yasmin Alam-Faruque,Irina M. Armean,Alan Bridge,C. Derow,M Feuermann,Avazeh T. Ghanbarian,Samuel Kerrien,Jyoti Khadake,J. Kerssemakers,C. Leroy,Michael P. Menden,Magali Michaut,Luisa Montecchi-Palazzi,S. N. Neuhauser,Sandra Orchard,Victoria M. Perreau,Bernd Roechert,K. van Eijk,Henning Hermjakob +20 more
TL;DR: In response to the growing data volume and user requests, IntAct now provides a two-tiered view of the interaction data, which allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies.
Journal ArticleDOI
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium
Sandra Orchard,Samuel Kerrien,Sara Abbani,Bruno Aranda,Jignesh Bhate,Shelby L. Bidwell,Alan Bridge,Leonardo Briganti,Fiona S. L. Brinkman,Gianni Cesareni,Andrew Chatr-aryamontri,Andrew Chatr-aryamontri,Emilie Chautard,Emilie Chautard,Carol Chen,Marine Dumousseau,Johannes B. Goll,Robert E. W. Hancock,Linda Hannick,Igor Jurisica,Jyoti Khadake,David J. Lynn,Usha Mahadevan,Livia Perfetto,Arathi Raghunath,Sylvie Ricard-Blum,Bernd Roechert,Lukasz Salwinski,Volker Stümpflen,Mike Tyers,Mike Tyers,Peter Uetz,Ioannis Xenarios,Ioannis Xenarios,Henning Hermjakob +34 more
TL;DR: The International Molecular Exchange consortium is an international collaboration between major public interaction data providers to share literature-curation efforts and make a nonredundant set of protein interactions available in a single search interface on a common website.