C
Choli Lee
Researcher at University of Washington
Publications - 54
Citations - 15392
Choli Lee is an academic researcher from University of Washington. The author has contributed to research in topics: Genome & Chromatin. The author has an hindex of 28, co-authored 51 publications receiving 13759 citations.
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Journal ArticleDOI
Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
Brian J. O'Roak,Laura Vives,Santhosh Girirajan,Emre Karakoc,Niklas Krumm,Bradley P. Coe,Roie Levy,Arthur Ko,Choli Lee,Joshua D. Smith,Emily H. Turner,Ian B. Stanaway,Benjamin Vernot,Maika Malig,Carl Baker,Beau Reilly,Joshua M. Akey,Elhanan Borenstein,Elhanan Borenstein,Mark J. Rieder,Deborah A. Nickerson,Raphael Bernier,Jay Shendure,Evan E. Eichler,Evan E. Eichler +24 more
TL;DR: It is shown that de novo point mutations are overwhelmingly paternal in origin (4:1 bias) and positively correlated with paternal age, consistent with the modest increased risk for children of older fathers to develop ASD.
Journal ArticleDOI
Exome sequencing identifies the cause of a Mendelian disorder
Sarah B H Ng,Kati J. Buckingham,Choli Lee,Abigail W. Bigham,Holly K. Tabor,Holly K. Tabor,Karin M. Dent,Chad D. Huff,Paul Shannon,Ethylin Wang Jabs,Ethylin Wang Jabs,Deborah A. Nickerson,Jay Shendure,Michael J. Bamshad,Michael J. Bamshad +14 more
TL;DR: Exome sequencing of a small number of unrelated affected individuals is a powerful, efficient strategy for identifying the genes underlying rare mendelian disorders and will likely transform the genetic analysis of monogenic traits.
Journal ArticleDOI
Targeted capture and massively parallel sequencing of 12 human exomes
Sarah B H Ng,Emily H. Turner,Peggy D. Robertson,Steven D. Flygare,Abigail W. Bigham,Choli Lee,Tristan Shaffer,Michelle Wong,Arindam Bhattacharjee,Evan E. Eichler,Michael J. Bamshad,Deborah A. Nickerson,Jay Shendure +12 more
TL;DR: It is shown that candidate genes for Mendelian disorders can be identified by exome sequencing of a small number of unrelated, affected individuals, and may be extendable to diseases with more complex genetics through larger sample sizes and appropriate weighting of non-synonymous variants by predicted functional impact.
Journal ArticleDOI
Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome
Sarah B. Ng,Abigail W. Bigham,Kati J. Buckingham,Mark C. Hannibal,Mark C. Hannibal,Margaret J. McMillin,Heidi I. S. Gildersleeve,Anita E. Beck,Anita E. Beck,Holly K. Tabor,Holly K. Tabor,Gregory M. Cooper,Heather C Mefford,Choli Lee,Emily H. Turner,Joshua D. Smith,Mark J. Rieder,Koh-ichiro Yoshiura,Naomichi Matsumoto,Tohru Ohta,Norio Niikawa,Deborah A. Nickerson,Michael J. Bamshad,Michael J. Bamshad,Jay Shendure +24 more
TL;DR: The results strongly suggest that mutations in MLL2, which encodes a Trithorax-group histone methyltransferase, are a major cause of Kabuki syndrome.
Journal ArticleDOI
Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
Brian J. O'Roak,Laura Vives,Wenqing Fu,Jarrett D. Egertson,Ian B. Stanaway,Ian G. Phelps,Ian G. Phelps,Gemma L. Carvill,Gemma L. Carvill,Akash Kumar,Choli Lee,Katy Ankenman,Jeff Munson,Joseph B. Hiatt,Emily H. Turner,Roie Levy,Diana R. O’Day,Niklas Krumm,Bradley P. Coe,Beth Martin,Elhanan Borenstein,Elhanan Borenstein,Deborah A. Nickerson,Heather C Mefford,Heather C Mefford,Dan Doherty,Dan Doherty,Joshua M. Akey,Raphael Bernier,Evan E. Eichler,Evan E. Eichler,Jay Shendure +31 more
TL;DR: The modified molecular inversion probe method was applied to 44 candidate genes to identify de novo mutations in a large cohort of individuals with and without autism spectrum disorder, supporting the notion that multiple genes underlie autism-spectrum disorders.