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Danielle J. Ingle

Researcher at University of Melbourne

Publications -  42
Citations -  1127

Danielle J. Ingle is an academic researcher from University of Melbourne. The author has contributed to research in topics: Medicine & Biology. The author has an hindex of 12, co-authored 33 publications receiving 674 citations. Previous affiliations of Danielle J. Ingle include Australian National University.

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Are Escherichia coli pathotypes still relevant in the era of whole-genome sequencing?

TL;DR: A typing scheme for E.coli based on genome sequences that includes elements of both the core and accessory genomes, should reduce typing anomalies and promote understanding of how different varieties of E. coli spread and cause disease.
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In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages

TL;DR: The approach bypasses the need for de novo genome assembly by directly screening WGS reads against a curated database of alleles linked to known and novel E. coli O-groups and H-types (the EcOH database) using the software package srst2.
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Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa.

TL;DR: Genomic analysis of atypical enteropathogenic Escherichia coli strains isolated from children younger than five years old in South Asia and sub-Saharan Africa uncovers high antibiotic resistance prevalence, which is correlated with antibiotic use.