D
David E. Shaw
Researcher at D. E. Shaw Research
Publications - 326
Citations - 50142
David E. Shaw is an academic researcher from D. E. Shaw Research. The author has contributed to research in topics: Massively parallel & G protein-coupled receptor. The author has an hindex of 88, co-authored 298 publications receiving 42616 citations. Previous affiliations of David E. Shaw include Protein Sciences & Genentech.
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Journal ArticleDOI
Minimizing thermodynamic length to select intermediate states for free-energy calculations and replica-exchange simulations.
TL;DR: This work derives bounds for quantities in terms of the thermodynamic distance between the intermediates in two cases where the choice of intermediate states is particularly important: minimizing statistical error in free-energy difference calculations and maximizing average acceptance probabilities in replica-exchange simulations.
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Insights into the conformational flexibility of Bruton's tyrosine kinase from multiple ligand complex structures.
Andreas Kuglstatter,April Wong,Stan Tsing,Simon W. Lee,Y. Lou,Armando G. Villaseñor,J.M. Bradshaw,David E. Shaw,Jim W. Barnett,Michelle F. Browner +9 more
TL;DR: The first crystal structure of a Tec kinase family member in the pharmacologically important DFG‐out conformation and bound to a type II kinase inhibitor is described, providing insights into the structural flexibility of BTK, the molecular basis of its regulation, and the structure‐based design of specific inhibitors.
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3-Amido Pyrrolopyrazine JAK Kinase Inhibitors: Development of a JAK3 vs JAK1 Selective Inhibitor and Evaluation in Cellular and in Vivo Models.
Michael Soth,Johannes C. Hermann,Calvin Yee,Muzaffar Alam,Jim W. Barnett,Pamela Berry,Michelle F. Browner,Karl Frank,Sandra Frauchiger,Seth F. Harris,Yang He,Mohammad Hekmat-Nejad,Than Hendricks,Robert Henningsen,Ramona Hilgenkamp,Hoangdung Ho,Ann F. Hoffman,Pei-Yuan Hsu,Dong-Qing Hu,Andrea Itano,Saul Jaime-Figueroa,Alam Jahangir,Sue Jin,Andreas Kuglstatter,Alan K. Kutach,Cheng Liao,Stephen M. Lynch,John Menke,Linghao Niu,Vaishali Patel,Aruna Railkar,Douglas Roy,Ada Shao,David E. Shaw,Sandra Steiner,Yongliang Sun,Seng-Lai Tan,Sandra M. Wang,Minh Diem Vu +38 more
TL;DR: Evaluation of a new inhibitor scaffold, 3-amido-5-cyclopropylpyrrolopyrazines, to a potent example with reasonable kinome selectivity, including selectivity for JAK3 versus JAK1, and good biopharmaceutical properties confirmed functional selectivity.
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Structural insights for design of potent spleen tyrosine kinase inhibitors from crystallographic analysis of three inhibitor complexes.
Armando G. Villaseñor,Rama K. Kondru,Hoangdung Ho,Sandra M. Wang,Eva Papp,David E. Shaw,Jim W. Barnett,Michelle F. Browner,Andreas Kuglstatter +8 more
TL;DR: The novel protein–ligand interactions and protein conformational changes revealed in these structures guide the rational design and structure‐based optimization of second‐generation spleen tyrosine kinase inhibitors.
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Identification of biomarkers for the antiangiogenic and antitumour activity of the superoxide dismutase 1 (SOD1) inhibitor tetrathiomolybdate (ATN-224)
Fernando Donate,Jose Juarez,M E Burnett,Mari Manuia,X Guan,David E. Shaw,Eric L. Smith,C. Timucin,Marc Braunstein,Olcay Batuman,Andrew P. Mazar +10 more
TL;DR: Preclinical evaluation of two potential biomarkers for the activity of tetrathiomolybdate: SOD activity measurements in blood cells in mice and levels of endothelial progenitor cells (EPCs) in bonnet macaques treated with ATN-224.