D
Dong Xu
Researcher at University of Missouri
Publications - 533
Citations - 21576
Dong Xu is an academic researcher from University of Missouri. The author has contributed to research in topics: Computer science & Protein structure prediction. The author has an hindex of 67, co-authored 483 publications receiving 18242 citations. Previous affiliations of Dong Xu include University of Missouri–St. Louis & University of Missouri–Kansas City.
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Journal ArticleDOI
Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz,Steven B. Cannon,Jessica A. Schlueter,Jessica A. Schlueter,Jianxin Ma,Therese Mitros,William Nelson,David L. Hyten,Qijian Song,Qijian Song,Jay J. Thelen,Jianlin Cheng,Dong Xu,Uffe Hellsten,Gregory D. May,Yeisoo Yu,Tetsuya Sakurai,Taishi Umezawa,Madan K. Bhattacharyya,Devinder Sandhu,Babu Valliyodan,Erika Lindquist,Myron Peto,David Grant,Shengqiang Shu,David Goodstein,Kerrie Barry,Montona Futrell-Griggs,Brian Abernathy,Jianchang Du,Zhixi Tian,Liucun Zhu,Navdeep Gill,Trupti Joshi,Marc Libault,Ananad Sethuraman,Xue-Cheng Zhang,Kazuo Shinozaki,Henry T. Nguyen,Rod A. Wing,Perry B. Cregan,James E. Specht,Jane Grimwood,Daniel S. Rokhsar,Gary Stacey,Randy C. Shoemaker,Scott A. Jackson +46 more
TL;DR: An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.
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Hydrogen bonds and salt bridges across protein-protein interfaces.
TL;DR: Differences between the interfacial hydrogen bonding patterns and the intra-chain ones further substantiate the notion that protein complexes formed by rigid binding may be far away from the global minimum conformations.
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Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
Yongqing Liu,Jizhong Zhou,Marina V. Omelchenko,Alexander S. Beliaev,Amudhan Venkateswaran,Julia Stair,Liyou Wu,Dorothea K. Thompson,Dong Xu,Igor B. Rogozin,Elena K. Gaidamakova,Min Zhai,Kira S. Makarova,Eugene V. Koonin,Michael J. Daly +14 more
TL;DR: Microarray data suggest that DEIRA cells efficiently coordinate their recovery by a complex network, within which both DNA repair and metabolic functions play critical roles, including a predicted distinct ATP-dependent DNA ligase and metabolic pathway switching that could prevent additional genomic damage elicited by metabolism-induced free radicals.
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An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants
Marc Libault,Andrew Farmer,Trupti Joshi,Kaori Takahashi,Raymond J. Langley,Levi D. Franklin,Ji He,Dong Xu,Gregory D. May,Gary Stacey +9 more
TL;DR: The expression patterns of genes implicated in nodulation, and also transcription factors, are investigated using both the Solexa sequence data and large-scale qRT-PCR, facilitating both basic and applied aspects of soybean research.
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Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees.
Ying Xu,Victor Olman,Dong Xu +2 more
TL;DR: A new framework for representing a set of multi-dimensional gene expression data as a Minimum Spanning Tree (MST), a concept from the graph theory, which can overcome many of the problems faced by classical clustering algorithms.