G
Gatis Pakarna
Researcher at Örebro University
Publications - 5
Citations - 259
Gatis Pakarna is an academic researcher from Örebro University. The author has contributed to research in topics: Neisseria gonorrhoeae & European union. The author has an hindex of 3, co-authored 3 publications receiving 188 citations.
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Journal ArticleDOI
Public health surveillance of multidrug-resistant clones of Neisseria gonorrhoeae in Europe: a genomic survey.
Simon R. Harris,Michelle J Cole,Gianfranco Spiteri,Leonor Sánchez-Busó,Daniel Golparian,Susanne Jacobsson,Richard Goater,Khalil Abudahab,Corin Yeats,Béatrice Berçot,Maria José Borrego,Brendan Crowley,Paola Stefanelli,Francesco Tripodo,Raquel Abad,David M. Aanensen,David M. Aanensen,Magnus Unemo,Jacinta Azevedo,Eszter Balla,Christopher Barbara,Thea Bergheim,Viviane Bremer,Susanne Buder,Panayiota Maikanti-Charalambous,Stephanie A. Chisholm,Susan Cowan,Tania Crucitti,Mercedes Diez,Maria Dudas,Kirstine Eastick,Agathe Goubard,Maria Haller,Guôrún Svanborg Hauksdóttir,Steen Hoffmann,Gwenda Hughes,Derval Igoe,Samo Jeverica,Irena Klavs,Hilde Kløvstad,Peter Kohl,Vasileia Konte,Ineke Linde,Violeta Mavcutko,Jackie M. Melillo,Gatis Pakarna,Peter Pavlik,Despo Pieridou,Guy La Ruche,Guôrún Sigmundsdóttir,Soteroulla Soteriou,Angelika Stary,Barbara Suligoi,Peter Truska,Eva Tzelepi,Birgit Van Benthem,Alje P. van Dam,Julio A. Vázquez,Inga Velicko,Ruth Verbrugge +59 more
TL;DR: This work provides the first use of joint analysis of WGS and epidemiological data in an international programme for regional surveillance of sexually transmitted infections and provides a framework for genomic surveillance of gonococci through standardised sampling, use of W GS, and a shared information architecture for interpretation and dissemination.
Journal ArticleDOI
WGS analysis and molecular resistance mechanisms of azithromycin-resistant (MIC >2 mg/L) Neisseria gonorrhoeae isolates in Europe from 2009 to 2014
Susanne Jacobsson,Daniel Golparian,Michelle J Cole,Gianfranco Spiteri,Irene Martin,Thea Bergheim,Maria José Borrego,Brendan Crowley,Tania Crucitti,Alje P. van Dam,Steen Hoffmann,Samo Jeverica,Peter Kohl,Beata Młynarczyk-Bonikowska,Gatis Pakarna,Angelika Stary,Paola Stefanelli,Peter Pavlik,Eva Tzelepi,Raquel Abad,Simon R. Harris,Magnus Unemo +21 more
TL;DR: The main azithromycin resistance mechanisms were the A2059G mutation (high-level resistance) and the C2611T mutation (low- and moderate- level resistance) in the 23S rRNA gene.
Journal ArticleDOI
Significant increase in azithromycin “resistance” and susceptibility to ceftriaxone and cefixime in Neisseria gonorrhoeae isolates in 26 European countries, 2019
Michaela Day,Susanne Jacobsson,Gianfranco Spiteri,Carina Kulishev,Noshin Sajedi,Neil Woodford,Benjamin Blumel,Marieke J. van der Werf,Andrew J Amato-Gauci,Michelle J Cole,C. Eder,Sonja Pleininger,Steliana Huhlescu,Irith De Baetselier,Blaženka Hunjak,Tatjana Nemeth Blažić,Panagiota Maikanti-Charalampous,Despo Pieridou,Hana Zákoucká,Helena Žemličková,Steen Hoffmann,Susan Cowan,R. Peetso,Jelena Viktorova,Ndeindo Ndeikoundam,Béatrice Berçot,Anu Patari Sampo,V. Kirjavainen,Susanne Buder,Klaus Jansen,Vivi Miriagou,Eszter Balla,Maria E. Dudas,Gudrun Sigmundsdottir,Lena Rós Ásmundsdóttir,Sinéad Saab,Brendan M. Crowley,Anna Carannante,Paola Stefanelli,Gatis Pakarna,Violeta Mavcutko,Robert Cassar,Christopher Barbara,F. Vella,Alje P. van Dam,Ineke Linde,Dominique A. Caugant,Hilde Kløvstad,Beata Młynarczyk-Bonikowska,Maria José Borrego,Peter Pavlik,Irena Klavs,T. Kustec,Julio A. Vázquez,Asunción Reynoso Díaz,Raquel Abad Torreblanca,Inga Velicko,Magnus Unemo,Helen Fifer,Kate Templeton +59 more
TL;DR: Agar dilution and minimum inhibitory concentration (MIC) gradient strip methodologies were used to determine the antimicrobial susceptibility (using EUCAST clinical breakpoints, where available) of 3239 N. gonorrhoeae isolates from 26 countries across the EU/EEA as mentioned in this paper .
Journal ArticleDOI
Ten years of external quality assessment (EQA) of Neisseria gonorrhoeae antimicrobial susceptibility testing in Europe elucidate high reliability of data
Michelle J Cole,Nerteley Quaye,Susanne Jacobsson,Michaela Day,Elizabeth Fagan,Catherine A Ison,Rachel Pitt,Shila Seaton,Neil Woodford,Angelika Stary,Sonja Pleininger,Tania Crucitti,Blaženka Hunjak,Panayiota Maikanti,Steen Hoffmann,Jelena Viktorova,Susanne Buder,Peter Kohl,Eva Tzelepi,Eirini Siatravani,Eszter Balla,Guðrún Svanborg Hauksdóttir,Lisa Rose,Paola Stefanelli,Anna Carannante,Gatis Pakarna,Francesca Mifsud,Rosann Zammit Cassar,Ineke Linde,Thea Bergheim,Martin Steinbakk,Beata Młynarczyk-Bonikowska,Maria-José Borrego,Jill Shepherd,Peter Pavlik,Samo Jeverica,Julio A. Vázquez,Raquel Abad,Sabrina Weiss,Sabrina Weiss,Sabrina Weiss,Gianfranco Spiteri,Magnus Unemo +42 more
TL;DR: The high level of comparability of results in this EQA scheme indicates that high quality data are produced by the Euro-GASP participants and gives confidence in susceptibility and resistance data generated by laboratories performing decentralised testing.
Journal ArticleDOI
New perspectives on respiratory syncytial virus surveillance at the national level: lessons from the COVID-19 pandemic
Anne C. Teirlinck,Caroline Klint Johannesen,Eeva Broberg,Pasi Penttinen,Harry Campbell,Harish Nair,Rachel M Reeves,Håkon Bøås,Maria Brytting,Wei Cai,AnnaSara Carnahan,Jean-Sébastien Casalegno,Kostas Danis,Cillian De Gascun,Joanna Ellis,Hanne-Dorthe Emborg,M. Gijón,Raquel Guiomar,Siddhivinayak Hirve,Helena Jirincova,Hanna Nohynek,Jesús Oliva,Richard Osei-Yeboah,John Paget,Gatis Pakarna,Richard Pebody,Lance Presser,Marie Rapp,Janine Reiche,Ana Paula Rodrigues,Elina Seppälä,Maja Sočan,K. Szymański,Ramona Trebbien,Jaromíra Večeřová,S. Van Der Werf,Maria Zambon,Adam Meijer,Thea K. Fischer +38 more
TL;DR: The emergence of SARS-CoV-2 and the resulting coronavirus disease 2019 (COVID-19) pandemic has led to the reconsideration of surveillance strategies for respiratory syncytial virus (RSV) and other respiratory viruses as mentioned in this paper .