Heejin Park

TL;DR: A linear-time algorithm to construct suffix arrays for integer alphabets, which do not use suffix trees as intermediate data structures during its construction, and implies that the time complexity of directly constructing suffix arrays matches that of constructing suffix trees.

TL;DR: Proteogenomic analysis of diffuse gastric cancers in young populations provides additional information beyond genomic analyses, which can improve understanding of cancer biology and patient stratification in diffuse GCs.

TL;DR: A linear-time algorithm to construct suffix arrays for integer alphabets, which do not use suffix trees as intermediate data structures during its construction, which implies that the time complexity of directly constructing suffix arrays matches that of constructing suffix trees.

TL;DR: MODi is powerful in that it can interpret a tandem mass spectrum even when hundreds of modification types are considered and the number of potential PTMs in a peptide is large, in contrast to most of the methods currently available for spectra interpretation that limit thenumber of PTM sites and types being used for PTM analysis.

TL;DR: A new algorithm, called MODi (pronounced “mod eye”), that rapidly searches for all known types of PTMs at once without limiting a multitude of modified sites in a peptide, which may exist in a greater variety than usually expected.