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Ioannis Xenarios
Researcher at University of Lausanne
Publications - 243
Citations - 38456
Ioannis Xenarios is an academic researcher from University of Lausanne. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 71, co-authored 233 publications receiving 34036 citations. Previous affiliations of Ioannis Xenarios include ISREC & École Polytechnique Fédérale de Lausanne.
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UniProt: A hub for protein information
Alex Bateman,Maria Jesus Martin,Claire O'Donovan,Michele Magrane,Rolf Apweiler,Emanuele Alpi,Ricardo Antunes,Joanna Arganiska,Benoit Bely,Mark Bingley,Carlos Bonilla,Ramona Britto,Borisas Bursteinas,Gayatri Chavali,Elena Cibrian-Uhalte,Alan Wilter Sousa da Silva,Maurizio De Giorgi,Tunca Doğan,Francesco Fazzini,Paul Gane,Leyla Jael Garcia Castro,Penelope Garmiri,Emma Hatton-Ellis,Reija Hieta,Rachael P. Huntley,Duncan Legge,W Liu,Jie Luo,Alistair MacDougall,Prudence Mutowo,Andrew Nightingale,Sandra Orchard,Klemens Pichler,Diego Poggioli,Sangya Pundir,Luis Pureza,Guoying Qi,Steven Rosanoff,Rabie Saidi,Tony Sawford,Aleksandra Shypitsyna,Edward Turner,Vladimir Volynkin,Tony Wardell,Xavier Watkins,Hermann Zellner,Andrew Peter Cowley,Luis Figueira,Weizhong Li,Hamish McWilliam,Rodrigo Lopez,Ioannis Xenarios,Lydie Bougueleret,Alan Bridge,Sylvain Poux,Nicole Redaschi,Lucila Aimo,Ghislaine Argoud-Puy,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,Marie Claude Blatter,Brigitte Boeckmann,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,Cristina Casal-Casas,Edouard de Castro,Elisabeth Coudert,Béatrice A. Cuche,M Doche,Dolnide Dornevil,Séverine Duvaud,Anne Estreicher,L Famiglietti,Marc Feuermann,Elisabeth Gasteiger,Sebastien Gehant,Vivienne Baillie Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,Florence Jungo,Guillaume Keller,Vicente Lara,P Lemercier,Damien Lieberherr,Thierry Lombardot,Xavier D. Martin,Patrick Masson,Anne Morgat,Teresa Batista Neto,Nevila Nouspikel,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Monica Pozzato,Manuela Pruess,Catherine Rivoire,Bernd Roechert,Michel Schneider,Christian J. A. Sigrist,K Sonesson,S Staehli,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,Anne Lise Veuthey,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,John S. Garavelli,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Baris E. Suzek,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,Lai-Su L. Yeh,Meher Shruti Yerramalla,Jian Zhang +127 more
TL;DR: An annotation score for all entries in UniProt is introduced to represent the relative amount of knowledge known about each protein to help identify which proteins are the best characterized and most informative for comparative analysis.
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Juan Antonio Vizcaíno,Eric W. Deutsch,Rui Wang,Attila Csordas,Florian Reisinger,Daniel Rios,José A. Dianes,Zhi-Jun Sun,Terry Farrah,Nuno Bandeira,Pierre-Alain Binz,Ioannis Xenarios,Martin Eisenacher,Gerhard Mayer,Laurent Gatto,A. F. C. Campos,Robert J. Chalkley,Hans-Joachim Kraus,Juan Pablo Albar,Salvador Martínez-Bartolomé,Rolf Apweiler,Gilbert S. Omenn,Lennart Martens,Andrew R. Jones,Henning Hermjakob +24 more
TL;DR: The PX submission tool simplifies the process of submitting data to PRIDE by automating the very labor-intensive and therefore time-heavy and expensive process of manually downloading and editing files.
Journal ArticleDOI
Activities at the Universal Protein Resource (UniProt)
Rolf Apweiler,Alex Bateman,Maria Jesus Martin,Claire O'Donovan,Michele Magrane,Yasmin Alam-Faruque,Emanuele Alpi,Ricardo Antunes,J Arganiska,EB Casanova,Benoit Bely,M Bingley,Carlos Bonilla,Ramona Britto,Borisas Bursteinas,WM Chan,Gayatri Chavali,Elena Cibrian-Uhalte,A Da Silva,M De Giorgi,Tunca Doğan,F. Fazzini,Paul Gane,Leyla Jael Garcia Castro,Penelope Garmiri,Emma Hatton-Ellis,Reija Hieta,Rachael P. Huntley,Duncan Legge,W Liu,Jie Luo,Alistair MacDougall,Prudence Mutowo,Andrew Nightingale,Sandra Orchard,Klemens Pichler,Diego Poggioli,Sangya Pundir,L Pureza,Guoying Qi,S. Rosanoff,Rabie Saidi,Tony Sawford,Aleksandra Shypitsyna,Edd Turner,Volynkin,Tony Wardell,Xavier Watkins,Hermann Zellner,Matthew Corbett,M Donnelly,P van Rensburg,Mickael Goujon,Hamish McWilliam,Rodrigo Lopez,Ioannis Xenarios,Lydie Bougueleret,Alan Bridge,Sylvain Poux,Nicole Redaschi,Lucila Aimo,Andrea H. Auchincloss,Kristian B. Axelsen,Parit Bansal,Delphine Baratin,P-A Binz,M. C. Blatter,Brigitte Boeckmann,Jerven Bolleman,Emmanuel Boutet,Lionel Breuza,C Casal-Casas,E de Castro,Lorenzo Cerutti,Elisabeth Coudert,Béatrice A. Cuche,M Doche,Dolnide Dornevil,Séverine Duvaud,Anne Estreicher,L Famiglietti,M Feuermann,Elisabeth Gasteiger,Sebastien Gehant,Gerritsen,Arnaud Gos,Nadine Gruaz-Gumowski,Ursula Hinz,Chantal Hulo,J. James,Florence Jungo,Guillaume Keller,Lara,P Lemercier,J Lew,Damien Lieberherr,Thierry Lombardot,Xavier D. Martin,Patrick Masson,Anne Morgat,Teresa Batista Neto,Salvo Paesano,Ivo Pedruzzi,Sandrine Pilbout,Monica Pozzato,Manuela Pruess,Catherine Rivoire,Bernd Roechert,Maria Victoria Schneider,Christian J. A. Sigrist,K Sonesson,S Staehli,Andre Stutz,Shyamala Sundaram,Michael Tognolli,Laure Verbregue,A-L Veuthey,Cathy H. Wu,Cecilia N. Arighi,Leslie Arminski,Chuming Chen,Yongxing Chen,John S. Garavelli,Hongzhan Huang,Kati Laiho,Peter B. McGarvey,Darren A. Natale,Baris E. Suzek,C. R. Vinayaka,Qinghua Wang,Yuqi Wang,L-S Yeh,Yerramalla,Jie Zhang +133 more
TL;DR: The mission of the Universal Protein Resource (UniProt) is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequences and functional annotation.
Journal ArticleDOI
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions
Ioannis Xenarios,Lukasz Salwinski,Xiaoqun Joyce Duan,Patrick Higney,Sul-Min Kim,David Eisenberg +5 more
TL;DR: The Database of Interacting Proteins (DIP) is a database that documents experimentally determined protein-protein interactions and provides the scientific community with an integrated set of tools for browsing and extracting information about protein interaction networks.
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ExPASy: SIB bioinformatics resource portal.
Panu Artimo,Manohar Jonnalagedda,Konstantin Arnold,Delphine Baratin,Gábor Csárdi,Edouard de Castro,Séverine Duvaud,Volker Flegel,Arnaud Fortier,Elisabeth Gasteiger,Aurélien Grosdidier,Céline Hernandez,Vassilios Ioannidis,Dmitry Kuznetsov,Robin Liechti,Sébastien Moretti,Khaled Mostaguir,Nicole Redaschi,Grégoire Rossier,Ioannis Xenarios,Heinz Stockinger +20 more
TL;DR: The new web interface provides, in particular, visual guidance for newcomers to ExPASy, becoming an extensible and integrative portal accessing many scientific resources, databases and software tools in different areas of life sciences.