M
Martin Eisenacher
Researcher at Ruhr University Bochum
Publications - 184
Citations - 15386
Martin Eisenacher is an academic researcher from Ruhr University Bochum. The author has contributed to research in topics: Proteomics Standards Initiative & Proteome. The author has an hindex of 40, co-authored 170 publications receiving 10876 citations. Previous affiliations of Martin Eisenacher include University of Southern Denmark & University of Münster.
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Journal ArticleDOI
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Yasset Perez-Riverol,Attila Csordas,Jingwen Bai,Manuel Bernal-Llinares,Suresh Hewapathirana,Deepti J. Kundu,Avinash Inuganti,Johannes Griss,Johannes Griss,Gerhard Mayer,Martin Eisenacher,Enrique Perez,Julian Uszkoreit,Julianus Pfeuffer,Timo Sachsenberg,Şule Yılmaz,Shivani Tiwary,Juergen Cox,Enrique Audain,Mathias Walzer,Andrew F. Jarnuczak,Tobias Ternent,Alvis Brazma,Juan Antonio Vizcaíno +23 more
TL;DR: Key statistics on the current data contents and volume of downloads are outlined, and how PRIDE data are starting to be disseminated to added-value resources including Ensembl, UniProt and Expression Atlas are outlined.
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ProteomeXchange provides globally coordinated proteomics data submission and dissemination
Juan Antonio Vizcaíno,Eric W. Deutsch,Rui Wang,Attila Csordas,Florian Reisinger,Daniel Rios,José A. Dianes,Zhi-Jun Sun,Terry Farrah,Nuno Bandeira,Pierre-Alain Binz,Ioannis Xenarios,Martin Eisenacher,Gerhard Mayer,Laurent Gatto,A. F. C. Campos,Robert J. Chalkley,Hans-Joachim Kraus,Juan Pablo Albar,Salvador Martínez-Bartolomé,Rolf Apweiler,Gilbert S. Omenn,Lennart Martens,Andrew R. Jones,Henning Hermjakob +24 more
TL;DR: The PX submission tool simplifies the process of submitting data to PRIDE by automating the very labor-intensive and therefore time-heavy and expensive process of manually downloading and editing files.
Journal ArticleDOI
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Yasset Perez-Riverol,Jingwen Bai,Chakradhar Bandla,David García-Seisdedos,Suresh Hewapathirana,Selvakumar Kamatchinathan,Deepti J. Kundu,Ananth Prakash,Anika Frericks-Zipper,Martin Eisenacher,Mathias Walzer,Shengbo Wang,Alvis Brazma,Juan Antonio Vizcaíno +13 more
TL;DR: The PRIDE database as discussed by the authors is the world's largest data repository of mass spectrometry-based proteomics data and is one of the founding members of the global ProteomeXchange (PX) consortium.
Journal ArticleDOI
Glucocorticoids induce differentiation of a specifically activated, anti-inflammatory subtype of human monocytes.
Jan Ehrchen,Lars Steinmüller,Katarzyna Barczyk,Klaus Tenbrock,Wolfgang Nacken,Martin Eisenacher,Ursula Nordhues,Clemens Sorg,Cord Sunderkötter,Johannes Roth +9 more
TL;DR: GC treatment did not cause a global suppression of monocytic effector functions but results in differentiation of a specific anti-inflammatory phenotype which seems to be actively involved in resolution of inflammatory reactions.
Journal ArticleDOI
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics
Alexander W. Bell,Eric W. Deutsch,Catherine E. Au,Robert E. Kearney,Ron Beavis,Salvatore Sechi,Tommy Nilsson,John J.M. Bergeron,Thomas A. Beardslee,Thomas Chappell,Gavin Meredith,Peter J. Sheffield,Phillip Gray,Mahbod Hajivandi,Marshall Pope,Paul F. Predki,Majlinda Kullolli,Marina Hincapie,William S. Hancock,Wei Jia,Lina Song,Lei Li,Junying Wei,Bing Yang,Jinglan Wang,Wantao Ying,Yangjun Zhang,Yun Cai,Xiaohong Qian,Fuchu He,Helmut E. Meyer,Christian Stephan,Martin Eisenacher,Katrin Marcus,Elmar Langenfeld,Caroline May,Steve A. Carr,Rushdy Ahmad,Wenhong Zhu,Jeffrey W. Smith,Samir M. Hanash,Jason J. Struthers,Hong Wang,Qing Zhang,Yanming An,Radoslav Goldman,Elisabet Carlsohn,Sjoerd van der Post,Kenneth E. Hung,David A. Sarracino,Kenneth C. Parker,Bryan Krastins,Raju Kucherlapati,Sylvie Bourassa,Guy G. Poirier,Eugene A. Kapp,Heather Patsiouras,Robert L. Moritz,Richard J. Simpson,Benoit Houle,Sylvie Laboissiere,Pavel Metalnikov,Vivian Nguyen,Tony Pawson,Catherine C. L. Wong,Daniel Cociorva,John R. Yates,Michael J. Ellison,Ana Lopez-Campistrous,P. D. Semchuk,Yueju Wang,Peipei Ping,Giuliano Elia,Michael J. Dunn,Kieran Wynne,Angela K. Walker,John R. Strahler,Philip C. Andrews,Brian L. Hood,William L. Bigbee,Thomas P. Conrads,Derek Smith,Christoph H. Borchers,Gilles A. Lajoie,Sean C. Bendall,Kaye D. Speicher,David W. Speicher,Masanori Fujimoto,Kazuyuki Nakamura,Young Ki Paik,Sang Yun Cho,Min-Seok Kwon,Hyoung Joo Lee,Seul Ki Jeong,An Sung Chung,Christine A. Miller,Rudolf Grimm,Katy Williams,Craig A. Dorschel,Jayson A. Falkner,Lennart Martens,Juan Antonio Vizcaíno +101 more
TL;DR: Central analysis determined missed identifications, environmental contamination, database matching and curation of protein identifications as sources of problems in liquid chromatography–mass spectrometry–based proteomics.