J
Jan Kosinski
Researcher at European Bioinformatics Institute
Publications - 64
Citations - 3111
Jan Kosinski is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Nuclear pore & Biology. The author has an hindex of 24, co-authored 52 publications receiving 2356 citations. Previous affiliations of Jan Kosinski include Polish Academy of Sciences & University of Giessen.
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Journal ArticleDOI
In situ structural analysis of the human nuclear pore complex
Alexander von Appen,Jan Kosinski,Lenore Sparks,Alessandro Ori,Amanda L. DiGuilio,Benjamin Vollmer,Marie-Therese Mackmull,Niccolò Banterle,Luca Parca,Panagiotis L. Kastritis,Katarzyna Buczak,Shyamal Mosalaganti,Wim J. H. Hagen,Amparo Andres-Pons,Edward A. Lemke,Peer Bork,Wolfram Antonin,Joseph S. Glavy,Khanh Huy Bui,Martin Beck +19 more
TL;DR: This work combines cryo-electron tomography with mass spectrometry, biochemical analysis, perturbation experiments and structural modelling to generate the most comprehensive architectural model of the human nuclear pore complex to date.
Journal ArticleDOI
Molecular architecture of the inner ring scaffold of the human nuclear pore complex.
Jan Kosinski,Shyamal Mosalaganti,Alexander von Appen,Roman Teimer,Amanda L. DiGuilio,William Wan,Khanh Huy Bui,Wim J. H. Hagen,John A. G. Briggs,Joseph S. Glavy,Ed Hurt,Martin Beck +11 more
TL;DR: This architectural map explains the vast majority of the electron density of the scaffold, and concludes that despite obvious differences in morphology and composition, the higher-order structure of the inner and outer rings is unexpectedly similar.
Journal ArticleDOI
Systematic analysis of protein turnover in primary cells
Toby Mathieson,Holger Franken,Jan Kosinski,Nils Kurzawa,Nico Zinn,Gavain Sweetman,Daniel Poeckel,Vikram S. Ratnu,Maike Schramm,Isabelle Becher,Michael Steidel,Kyung-Min Noh,Giovanna Bergamini,Martin Beck,Marcus Bantscheff,Mikhail M. Savitski +15 more
TL;DR: The accuracy and precision of mass spectrometry-based quantification is improved, enabling reliable protein half-life determination in several non-dividing cell types, illustrating that the approach allows investigating protein turnover and its implications in various cell types.
Journal ArticleDOI
A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
Jan Kosinski,Iwona A. Cymerman,Marcin Feder,Michal A. Kurowski,Joanna M. Sasin,Janusz M. Bujnicki +5 more
TL;DR: A new multi‐step protocol to predict the structures of all targets during CASP5, regardless of their potential category, using diverse fold‐recognition methods and the novelty of this approach is in the focus on “vertical” recombination of structure fragments, rather than “horizontal” sequence alignment typical for comparative modeling.
Journal ArticleDOI
Molecular structures of unbound and transcribing RNA polymerase III
Niklas A. Hoffmann,Arjen J. Jakobi,María Moreno-Morcillo,Sebastian Glatt,Jan Kosinski,Wim J. H. Hagen,Carsten Sachse,Christoph W. Müller +7 more
TL;DR: Cryo-electron microscopy structures of the Saccharomyces cerevisiae Pol III elongating complex and the apo Pol III enzyme in two different conformations are presented, providing novel insights into Pol III-specific transcription and the adaptation of Pol III towards its small transcriptional targets.