J
Jasper J. Koehorst
Researcher at Wageningen University and Research Centre
Publications - 49
Citations - 1940
Jasper J. Koehorst is an academic researcher from Wageningen University and Research Centre. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 16, co-authored 42 publications receiving 1418 citations. Previous affiliations of Jasper J. Koehorst include University of Queensland.
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Journal ArticleDOI
Diversity of tryptophan halogenases in sponges of the genus Aplysina
Johanna Gutleben,Jasper J. Koehorst,Kyle McPherson,Shirley A. Pomponi,René H. Wijffels,René H. Wijffels,Hauke Smidt,Detmer Sipkema +7 more
TL;DR: Correlations of relative abundances of halogenases with those of bacterial taxa suggest that prominent sponge symbiotic bacteria, including Chloroflexi and Actinobacteria, are putative producers of the detected enzymes and may thus contribute to the chemical defense of their host.
Journal ArticleDOI
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation.
Jesse C. J. van Dam,Jasper J. Koehorst,Jon Olav Vik,Vitor A. P. Martins dos Santos,Peter J. Schaap,Maria Suarez-Diez +5 more
TL;DR: Empusa as discussed by the authors is a code generator that facilitates the creation of composite RDF resources from disparate sources, which can be used to perform data consistency checks and generate Markdown documentation to make persistent URLs resolvable.
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The Constructor: a web application optimizing cloning strategies based on modules from the registry of standard biological parts
Matthijn C Hesselman,Jasper J. Koehorst,Thijs Slijkhuis,Dorett I Odoni,Floor Hugenholtz,Mark W. J. van Passel +5 more
TL;DR: The Constructor is presented, a constructive web tool that simplifies the in silico assembly of pre-designed gene circuitries from standard parts, reducing both planning and subsequent cloning time.
Journal ArticleDOI
The Empusa code generator: bridging the gap between the intended and the actual content of RDF resources
TL;DR: Empusa as mentioned in this paper is a gatekeeping system that compares the intended content described in the ontology with the actual content of the resource to facilitate the creation of composite RDF resources from disparate sources.
Journal ArticleDOI
Genomic convergence between Akkermansia muciniphila in different mammalian hosts.
Sharon Y. Geerlings,Janneke P. Ouwerkerk,Jasper J. Koehorst,Jarmo Ritari,Steven Aalvink,Bärbel Stecher,Peter J. Schaap,Lars Paulin,Willem M. de Vos,Clara Belzer +9 more
TL;DR: A. muciniphila is a member of the human gut microbiota where it resides in the mucus layer and uses mucin as the sole carbon, nitrogen and energy source.