J
Jingyuan Song
Researcher at Peking Union Medical College
Publications - 193
Citations - 10113
Jingyuan Song is an academic researcher from Peking Union Medical College. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 45, co-authored 183 publications receiving 8109 citations. Previous affiliations of Jingyuan Song include Chinese Ministry of Education & State Administration of Traditional Chinese Medicine of the People's Republic of China.
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Journal ArticleDOI
Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species.
Shilin Chen,Hui Yao,Jianping Han,Chang Liu,Jingyuan Song,Linchun Shi,Yingjie Zhu,Xinye Ma,Ting Gao,Xiaohui Pang,Kun Luo,Ying Li,Xiwen Li,Xiaocheng Jia,Yulin Lin,Christine Leon +15 more
TL;DR: The second internal transcribed spacer (ITS2) of nuclear ribosomal DNA represents the most suitable region for DNA barcoding applications and can be potentially used as a standard DNA barcode to identify medicinal plants and their closely related species.
Journal ArticleDOI
Use of ITS2 Region as the Universal DNA Barcode for Plants and Animals
Hui Yao,Jingyuan Song,Chang Liu,Kun Luo,Kun Luo,Jianping Han,Ying Li,Xiaohui Pang,Hong-Xi Xu,Yingjie Zhu,Peigen Xiao,Shilin Chen +11 more
TL;DR: It is proposed that the ITS2 locus should be used as a universal DNA barcode for identifying plant species and as a complementary locus for CO1 to identify animal species.
Journal ArticleDOI
FastUniq: a fast de novo duplicates removal tool for paired short reads.
Haibin Xu,Xiang Luo,Jun Qian,Xiaohui Pang,Jingyuan Song,Guangrui Qian,Jinhui Chen,Shilin Chen +7 more
TL;DR: FastUniq is presented as a fast de novo tool for removal of duplicates in paired short reads from next-generation sequencing platforms and results in highly efficient running time, which increases linearly at an average speed of 87 million reads per 10 minutes.
Journal ArticleDOI
Genome sequence of the model medicinal mushroom Ganoderma lucidum
Shilin Chen,Jiang Xu,Chang Liu,Yingjie Zhu,David R. Nelson,Shiguo Zhou,Chunfang Li,Lizhi Wang,Xu Guo,Yongzhen Sun,Hongmei Luo,Ying Li,Jingyuan Song,Bernard Henrissat,Anthony Levasseur,Jun Qian,Jianqin Li,Xiang Luo,Linchun Shi,Liu He,Li Xiang,Xiaolan Xu,Yunyun Niu,Qiushi Li,Mira V. Han,Haixia Yan,Jin Zhang,Haimei Chen,Aiping Lv,Zhen Wang,Mingzhu Liu,David C. Schwartz,Chao Sun +32 more
TL;DR: The sequence analysis reveals an impressive array of genes encoding cytochrome P450s (CYPs), transporters and regulatory proteins that cooperate in secondary metabolism, making this organism a potential model system for the study of secondary metabolic pathways and their regulation in medicinal fungi.
Journal ArticleDOI
Full-length transcriptome sequences and splice variants obtained by a combination of sequencing platforms applied to different root tissues of Salvia miltiorrhiza and tanshinone biosynthesis.
Zhichao Xu,Reuben J. Peters,Jason L. Weirather,Hongmei Luo,Baosheng Liao,Xin Zhang,Yingjie Zhu,Aijia Ji,Bing Zhang,Songnian Hu,Kin Fai Au,Jingyuan Song,Shilin Chen +12 more
TL;DR: It is demonstrated that the tanshinone pigments are produced and accumulate in the root periderm, and a combination of NGS and single-molecule real-time (SMRT) sequencing to various root tissues is applied to provide a more complete view of the S. miltiorrhiza transcriptome.