J
John Iodice
Researcher at University of Pennsylvania
Publications - 17
Citations - 4816
John Iodice is an academic researcher from University of Pennsylvania. The author has contributed to research in topics: PlasmoDB & Genome. The author has an hindex of 13, co-authored 17 publications receiving 4138 citations. Previous affiliations of John Iodice include Plant Genome Mapping Laboratory & University of Georgia.
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Journal ArticleDOI
PlasmoDB: a functional genomic database for malaria parasites
Cristina Aurrecoechea,John Brestelli,Brian P. Brunk,Jennifer Dommer,Steve Fischer,Bindu Gajria,Xin Gao,Alan R. Gingle,Gregory R. Grant,Omar S. Harb,Mark Heiges,Frank Innamorato,John Iodice,Jessica C. Kissinger,Eileen Kraemer,Wei Li,John A. Miller,Vishal Nayak,Cary Pennington,Deborah F. Pinney,David S. Roos,Chris Ross,Christian J. Stoeckert,Charles Treatman,Haiming Wang +24 more
TL;DR: PlasmoDB as mentioned in this paper is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale.
Wang H: PlasmoDB: a functional genomic database for malaria parasites
Cristina Aurrecoechea,John Brestelli,Brian P. Brunk,Jennifer Dommer,Steve Fischer,Bindu Gajria,Xin Gao,Alan R. Gingle,Greg Grant,Omar S. Harb,Mark Heiges,Frank Innamorato,John Iodice,Jessica C. Kissinger,Eileen Kraemer,Wei Li,John A. Miller,Vishal Nayak,Cary Pennington,Deborah F. Pinney,David S. Roos,Chris Ross,Christian J. Stoeckert,Charles Treatman,Haiming Wang +24 more
TL;DR: The latest release, PlasmoDB 5.5, contains numerous new data types from several broad categories—annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution.
Journal ArticleDOI
TriTrypDB: a functional genomic resource for the Trypanosomatidae
Martin Aslett,Cristina Aurrecoechea,Matthew Berriman,John Brestelli,Brian P. Brunk,Mark Carrington,Daniel P. Depledge,Steve Fischer,Bindu Gajria,Xin Gao,Malcolm J. Gardner,Alan R. Gingle,Gregory R. Grant,Omar S. Harb,Mark Heiges,Christiane Hertz-Fowler,Robin Houston,Frank Innamorato,John Iodice,Jessica C. Kissinger,Eileen Kraemer,Wei Li,Flora J. Logan,John A. Miller,Siddhartha Mitra,Peter J. Myler,Vishal Nayak,Cary Pennington,Isabelle Phan,Deborah F. Pinney,Gowthaman Ramasamy,Matthew B. Rogers,David S. Roos,Christopher A. Ross,Dhileep Sivam,Deborah F. Smith,Ganesh Srinivasamoorthy,Christian J. Stoeckert,Sandhya Subramanian,Ryan Thibodeau,Adrian Tivey,Charles Treatman,Giles S. Velarde,Haiming Wang +43 more
TL;DR: TriTrypDB is an integrated database providing access to genome-scale datasets for kinetoplastid parasites, and supporting a variety of complex queries driven by research and development needs, utilizing a sophisticated search strategy system.
Journal ArticleDOI
ToxoDB: an integrated Toxoplasma gondii database resource.
Bindu Gajria,Amit Bahl,John Brestelli,Jennifer Dommer,Steve Fischer,Xin Gao,Mark Heiges,John Iodice,Jessica C. Kissinger,Aaron J. Mackey,Deborah F. Pinney,David S. Roos,Christian J. Stoeckert,Haiming Wang,Brian P. Brunk +14 more
TL;DR: ToxoDB has matured significantly since its initial release and the numerous updates with respect to the data and increased functionality available on the website are outlined.
Reference EntryDOI
Using OrthoMCL to assign proteins to OrthoMCL-DB groups or to cluster proteomes into new ortholog groups.
Steve Fischer,Brian P. Brunk,Feng Chen,Xin Gao,Omar S. Harb,John Iodice,Dhanasekaran Shanmugam,David S. Roos,Christian J. Stoeckert +8 more
TL;DR: This work describes how you can group your proteins of interest into ortholog clusters using two different means provided by the OrthoMCL system.