A
Alan R. Gingle
Researcher at University of Georgia
Publications - 27
Citations - 8043
Alan R. Gingle is an academic researcher from University of Georgia. The author has contributed to research in topics: Genome & Gossypium. The author has an hindex of 17, co-authored 27 publications receiving 7188 citations. Previous affiliations of Alan R. Gingle include University of Pennsylvania & Plant Genome Mapping Laboratory.
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Journal ArticleDOI
The Sorghum bicolor genome and the diversification of grasses
Andrew H. Paterson,John E. Bowers,Rémy Bruggmann,Inna Dubchak,Jane Grimwood,Heidrun Gundlach,Georg Haberer,Uffe Hellsten,Therese Mitros,Alexander Poliakov,Jeremy Schmutz,Manuel Spannagl,Haibao Tang,Xiyin Wang,Xiyin Wang,Thomas Wicker,Arvind K. Bharti,Jarrod Chapman,F. Alex Feltus,F. Alex Feltus,Udo Gowik,Igor V. Grigoriev,Eric Lyons,Christopher G. Maher,Mihaela Martis,Apurva Narechania,Robert Otillar,Bryan W. Penning,Asaf Salamov,Yu Wang,Lifang Zhang,Nicholas C. Carpita,Michael Freeling,Alan R. Gingle,C. Thomas Hash,Beat Keller,Patricia E. Klein,Stephen Kresovich,Maureen C. McCann,Ray Ming,Daniel G. Peterson,Daniel G. Peterson,Mehboob-ur-Rahman,Mehboob-ur-Rahman,Doreen Ware,Doreen Ware,Peter Westhoff,Klaus F. X. Mayer,Joachim Messing,Daniel S. Rokhsar,Daniel S. Rokhsar +50 more
TL;DR: An initial analysis of the ∼730-megabase Sorghum bicolor (L.) Moench genome is presented, placing ∼98% of genes in their chromosomal context using whole-genome shotgun sequence validated by genetic, physical and syntenic information.
Journal ArticleDOI
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Andrew H. Paterson,Jonathan F. Wendel,Heidrun Gundlach,Hui Guo,Jerry Jenkins,Dianchuan Jin,Danny J. Llewellyn,Kurtis C. Showmaker,Shengqiang Shu,Joshua A. Udall,Mi-Jeong Yoo,Robert L. Byers,Wei Chen,Adi Doron-Faigenboim,Mary V. Duke,Lei Gong,Jane Grimwood,Corrinne E. Grover,Kara Grupp,Guanjing Hu,Tae-Ho Lee,Jingping Li,Lifeng Lin,Tao Liu,Barry S. Marler,Justin T. Page,Alison W. Roberts,Elisson Romanel,William S. Sanders,Emmanuel Szadkowski,Xu Tan,Haibao Tang,Haibao Tang,Chunming Xu,Chunming Xu,Jinpeng Wang,Zining Wang,Dong Zhang,Lan Zhang,Hamid Ashrafi,Frank Bedon,John E. Bowers,Curt L. Brubaker,Curt L. Brubaker,Peng W. Chee,Sayan Das,Alan R. Gingle,Candace H. Haigler,David B. Harker,Lucia Vieira Hoffmann,Ran Hovav,Don C. Jones,Cornelia Lemke,Shahid Mansoor,Shahid Mansoor,Mehboob-ur Rahman,Lisa N. Rainville,Aditi Rambani,Umesh K. Reddy,Junkang Rong,Yehoshua Saranga,Brian E. Scheffler,Jodi A. Scheffler,David M. Stelly,Barbara A. Triplett,Allen Van Deynze,Maite F S Vaslin,V. N. Waghmare,Sally A. Walford,Robert J. Wright,Essam A. Zaki,Tianzhen Zhang,Elizabeth S. Dennis,Klaus F. X. Mayer,Daniel G. Peterson,Daniel S. Rokhsar,Xiyin Wang,Jeremy Schmutz +77 more
TL;DR: It is shown that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1–2 Myr ago, conferred about 30–36-fold duplication of ancestral angiosperm genes in elite cottons, genetic complexity equalled only by Brassica among sequenced angiosperms.
Journal ArticleDOI
PlasmoDB: a functional genomic database for malaria parasites
Cristina Aurrecoechea,John Brestelli,Brian P. Brunk,Jennifer Dommer,Steve Fischer,Bindu Gajria,Xin Gao,Alan R. Gingle,Gregory R. Grant,Omar S. Harb,Mark Heiges,Frank Innamorato,John Iodice,Jessica C. Kissinger,Eileen Kraemer,Wei Li,John A. Miller,Vishal Nayak,Cary Pennington,Deborah F. Pinney,David S. Roos,Chris Ross,Christian J. Stoeckert,Charles Treatman,Haiming Wang +24 more
TL;DR: PlasmoDB as mentioned in this paper is a functional genomic database for Plasmodium spp. that provides a resource for data analysis and visualization in a gene-by-gene or genome-wide scale.
Wang H: PlasmoDB: a functional genomic database for malaria parasites
Cristina Aurrecoechea,John Brestelli,Brian P. Brunk,Jennifer Dommer,Steve Fischer,Bindu Gajria,Xin Gao,Alan R. Gingle,Greg Grant,Omar S. Harb,Mark Heiges,Frank Innamorato,John Iodice,Jessica C. Kissinger,Eileen Kraemer,Wei Li,John A. Miller,Vishal Nayak,Cary Pennington,Deborah F. Pinney,David S. Roos,Chris Ross,Christian J. Stoeckert,Charles Treatman,Haiming Wang +24 more
TL;DR: The latest release, PlasmoDB 5.5, contains numerous new data types from several broad categories—annotated genomes, evidence of transcription, proteomics evidence, protein function evidence, population biology and evolution.
Journal ArticleDOI
TriTrypDB: a functional genomic resource for the Trypanosomatidae
Martin Aslett,Cristina Aurrecoechea,Matthew Berriman,John Brestelli,Brian P. Brunk,Mark Carrington,Daniel P. Depledge,Steve Fischer,Bindu Gajria,Xin Gao,Malcolm J. Gardner,Alan R. Gingle,Gregory R. Grant,Omar S. Harb,Mark Heiges,Christiane Hertz-Fowler,Robin Houston,Frank Innamorato,John Iodice,Jessica C. Kissinger,Eileen Kraemer,Wei Li,Flora J. Logan,John A. Miller,Siddhartha Mitra,Peter J. Myler,Vishal Nayak,Cary Pennington,Isabelle Phan,Deborah F. Pinney,Gowthaman Ramasamy,Matthew B. Rogers,David S. Roos,Christopher A. Ross,Dhileep Sivam,Deborah F. Smith,Ganesh Srinivasamoorthy,Christian J. Stoeckert,Sandhya Subramanian,Ryan Thibodeau,Adrian Tivey,Charles Treatman,Giles S. Velarde,Haiming Wang +43 more
TL;DR: TriTrypDB is an integrated database providing access to genome-scale datasets for kinetoplastid parasites, and supporting a variety of complex queries driven by research and development needs, utilizing a sophisticated search strategy system.