M
Molly Gasperini
Researcher at University of Washington
Publications - 19
Citations - 1978
Molly Gasperini is an academic researcher from University of Washington. The author has contributed to research in topics: CRISPR & Human genome. The author has an hindex of 14, co-authored 18 publications receiving 1359 citations. Previous affiliations of Molly Gasperini include Boston Children's Hospital & Harvard University.
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Journal ArticleDOI
Accurate classification of BRCA1 variants with saturation genome editing.
Gregory M. Findlay,Riza M. Daza,Beth Martin,Melissa D. Zhang,Anh Leith,Molly Gasperini,Joseph D. Janizek,Xingfan Huang,Lea M. Starita,Jay Shendure +9 more
TL;DR: Saturation genome editing is used to assay 96.5% of all possible single-nucleotide variants in 13 exons that encode functionally critical domains of BRCA1, and functional effects for nearly 4,000 SNVs are bimodally distributed and almost perfectly concordant with established assessments of pathogenicity.
Journal ArticleDOI
A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.
Molly Gasperini,Andrew J. Hill,José L. McFaline-Figueroa,Beth Martin,Seungsoo Kim,Melissa D. Zhang,Dana Jackson,Anh Leith,Jacob Schreiber,William Stafford Noble,Cole Trapnell,Nadav Ahituv,Jay Shendure,Jay Shendure +13 more
TL;DR: A multiplex, expression quantitative trait locus (eQTL)-inspired framework for mapping enhancer-gene pairs by introducing random combinations of CRISPR/Cas9-mediated perturbations to each of many cells, followed by single-cell RNA sequencing (RNA-seq).
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Towards a comprehensive catalogue of validated and target-linked human enhancers
TL;DR: Gasserini et al. as mentioned in this paper reviewed emerging technologies for discovering, characterizing and validating human enhancers at scale and proposed a new framework for operationally defining enhancers that accommodates the heterogeneous and complementary results emerging from reporter assays, biochemical measurements and CRISPR screens.
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On the design of CRISPR-based single-cell molecular screens.
Andrew J. Hill,José L. McFaline-Figueroa,Lea M. Starita,Molly Gasperini,Kenneth A. Matreyek,Jonathan S. Packer,Dana Jackson,Jay Shendure,Jay Shendure,Cole Trapnell +9 more
TL;DR: This work optimized a published alternative, CROP-seq, in which the guide RNA also serves as the barcode, and here confirm that this strategy performs robustly and doubled the rate at which guides are assigned to cells to 94%.
Journal ArticleDOI
MicroRNA-199a is induced in dystrophic muscle and affects WNT signaling, cell proliferation, and myogenic differentiation
Matthew S. Alexander,Genri Kawahara,Norio Motohashi,Juan Carlos Casar,Iris Eisenberg,Jennifer Myers,Molly Gasperini,Elicia Estrella,Alvin T. Kho,Alvin T. Kho,Satomi Mitsuhashi,Frederic Shapiro,Peter B. Kang,Louis M. Kunkel +13 more
TL;DR: The miR-199a-5p mature miRNA sequences are transcribed from stem loop precursor miRNAs that are found within the introns of the dynamin-2 and dynamin3 loci as discussed by the authors.