N
Nitesh Turaga
Researcher at Roswell Park Cancer Institute
Publications - 12
Citations - 2024
Nitesh Turaga is an academic researcher from Roswell Park Cancer Institute. The author has contributed to research in topics: Bioconductor & Differentially methylated regions. The author has an hindex of 5, co-authored 11 publications receiving 1676 citations. Previous affiliations of Nitesh Turaga include Johns Hopkins University & Walter and Eliza Hall Institute of Medical Research.
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The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
Enis Afgan,Dannon Baker,Marius van den Beek,Daniel Blankenberg,Dave Bouvier,Martin Čech,John Chilton,Dave Clements,Nate Coraor,Carl Eberhard,Björn Grüning,Aysam Guerler,Jennifer Hillman-Jackson,Gregory Von Kuster,Eric Rasche,Nicola Soranzo,Nitesh Turaga,James Taylor,Anton Nekrutenko,Jeremy Goecks +19 more
TL;DR: Galaxy seeks to make data-intensive research more accessible, transparent and reproducible by providing a Web-based environment in which users can perform computational analyses and have all of the details automatically tracked for later inspection, publication, or reuse.
Journal ArticleDOI
A panel of novel detection and prognostic methylated DNA markers in primary non-small cell lung cancer and serum DNA
Akira Ooki,Zahra Maleki,Jun Chieh J. Tsay,Chandra Goparaju,Mariana Brait,Nitesh Turaga,Hae Seong Nam,Hae Seong Nam,William N. Rom,Harvey I. Pass,David Sidransky,Rafael Guerrero-Preston,Rafael Guerrero-Preston,Mohammad O. Hoque +13 more
TL;DR: Promoter methylation of a panel of 6 genes has potential for use as a biomarker for early cancer detection and to predict prognosis at the time of diagnosis.
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Toward a gold standard for benchmarking gene set enrichment analysis.
Ludwig Geistlinger,Gergely Csaba,Mara Santarelli,Marcel Ramos,Lucas Schiffer,Nitesh Turaga,Charity W. Law,Sean Davis,Vincent J. Carey,Martin Morgan,Ralf Zimmer,Levi Waldron +11 more
TL;DR: An extensible framework for reproducible benchmarking of enrichment methods based on defined criteria for applicability, gene set prioritization and detection of relevant processes is developed.
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High expression of SLCO2B1 is associated with prostate cancer recurrence after radical prostatectomy.
Tomoaki Terakawa,Eriko Katsuta,Li Yan,Nitesh Turaga,Kerry-Ann McDonald,Masato Fujisawa,Khurshid A. Guru,Kazuaki Takabe +7 more
TL;DR: The impact of the expression levels of SLCO2B1 on prognosis in localized PCa after radical prostatectomy (RP) utilizing 494 PCa cases in The Cancer Genome Atlas is demonstrated.
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The Rockerverse: Packages and Applications for Containerisation with R
Daniel Nüst,Dirk Eddelbuettel,Dom Bennett,Robrecht Cannoodt,Dav Clark,Gergely Daróczi,Mark Edmondson,Colin Fay,Ellis Hughes,Lars Kjeldgaard,Sean Lopp,Ben Marwick,Heather Nolis,Jacqueline Nolis,Hong Ooi,Karthik Ram,Noam Ross,Lori Shepherd,Péter Sólymos,Tyson L. Swetnam,Nitesh Turaga,Charlotte Van Petegem,Jason Williams,Craig Willis,Nan Xiao +24 more
TL;DR: The current growth and diversification of use cases is likely to continue its positive impact, but the need for consolidating the Rockerverse ecosystem of packages, developing common practices for applications, and exploring alternative containerisation software is seen.