R
Ronald W. Kenyon
Researcher at University of Virginia
Publications - 15
Citations - 3800
Ronald W. Kenyon is an academic researcher from University of Virginia. The author has contributed to research in topics: Web service & Gene. The author has an hindex of 10, co-authored 14 publications receiving 2787 citations. Previous affiliations of Ronald W. Kenyon include Virginia Tech & Virginia Bioinformatics Institute.
Papers
More filters
Journal ArticleDOI
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Alice R. Wattam,James J. Davis,James J. Davis,Rida Assaf,Sébastien Boisvert,Thomas Brettin,Thomas Brettin,Christopher Bun,Neal Conrad,Neal Conrad,Emily M. Dietrich,Emily M. Dietrich,Terry Disz,Joseph L. Gabbard,Svetlana Gerdes,Christopher S. Henry,Ronald W. Kenyon,Dustin Machi,Chunhong Mao,Eric K. Nordberg,Gary J. Olsen,Daniel E. Murphy-Olson,Robert Olson,Robert Olson,Ross Overbeek,Bruce Parrello,Gordon D. Pusch,Maulik Shukla,Maulik Shukla,Veronika Vonstein,Andrew S. Warren,Fangfang Xia,Fangfang Xia,Hyunseung Yoo,Hyunseung Yoo,Rick Stevens,Rick Stevens +36 more
TL;DR: The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center, which provides services for RNA-Seq, variation, model reconstruction and differential expression analysis, all delivered through an updated private workspace.
Journal ArticleDOI
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam,David Abraham,Oral Dalay,Terry Disz,Timothy P. Driscoll,Joseph L. Gabbard,Joseph J. Gillespie,Roger Gough,Deborah Hix,Ronald W. Kenyon,Dustin Machi,Chunhong Mao,Eric K. Nordberg,Robert Olson,Ross Overbeek,Gordon D. Pusch,Maulik Shukla,Julie R. Schulman,Rick Stevens,Daniel E. Sullivan,Veronika Vonstein,Andrew S. Warren,Rebecca Will,Meredith J. C. Wilson,Hyunseung Yoo,Chengdong Zhang,Yan Zhang,Bruno W. S. Sobral +27 more
TL;DR: The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) and describes updates to the PATRIC since its initial report in the 2007 NAR Database Issue.
Journal ArticleDOI
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
James J. Davis,James J. Davis,Alice R. Wattam,Alice R. Wattam,Ramy K. Aziz,Thomas Brettin,Thomas Brettin,Ralph Butler,Ralph Butler,Rory Butler,Philippe Chlenski,Neal Conrad,Neal Conrad,Allan Dickerman,Emily M. Dietrich,Emily M. Dietrich,Joseph L. Gabbard,Svetlana Gerdes,Andrew Guard,Ronald W. Kenyon,Dustin Machi,Chunhong Mao,Daniel E. Murphy-Olson,Daniel E. Murphy-Olson,Marcus Nguyen,Marcus Nguyen,Eric K. Nordberg,Gary J. Olsen,Robert Olson,Robert Olson,Jamie C. Overbeek,Jamie C. Overbeek,Ross Overbeek,Bruce Parrello,Bruce Parrello,Gordon D. Pusch,Maulik Shukla,Maulik Shukla,Chris Thomas,Margo VanOeffelen,Veronika Vonstein,Andrew S. Warren,Fangfang Xia,Fangfang Xia,Dawen Xie,Hyunseung Yoo,Hyunseung Yoo,Rick Stevens,Rick Stevens +48 more
TL;DR: The recent updates to the PATRIC resource are reported, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.
Journal ArticleDOI
PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species
Joseph J. Gillespie,Joseph J. Gillespie,Alice R. Wattam,Stephen A. Cammer,Joseph L. Gabbard,Maulik Shukla,Oral Dalay,Timothy P. Driscoll,Deborah Hix,Shrinivasrao P. Mane,Chunhong Mao,Eric K. Nordberg,Mark Scott,Julie R. Schulman,Eric E. Snyder,Eric E. Snyder,Daniel E. Sullivan,Chunxia Wang,Chunxia Wang,Andrew S. Warren,Kelly P. Williams,Kelly P. Williams,Tian Xue,Hyunseung Yoo,Chengdong Zhang,Yan Zhang,Rebecca Will,Ronald W. Kenyon,Bruno W. S. Sobral +28 more
TL;DR: The major features available at PATRIC are summarized, dividing the resources into two major categories: organisms, genomes, and comparative genomics and (ii) recurrent integration of community-derived associated data.
Journal ArticleDOI
Antimicrobial Resistance Prediction in PATRIC and RAST.
James J. Davis,Sébastien Boisvert,Thomas Brettin,Thomas Brettin,Ronald W. Kenyon,Chunhong Mao,Robert Olson,Robert Olson,Ross Overbeek,John Santerre,Maulik Shukla,Maulik Shukla,Alice R. Wattam,Rebecca Will,Fangfang Xia,Fangfang Xia,Rick Stevens,Rick Stevens +17 more
TL;DR: The PATRIC FTP server is updated to enable access to genomes that are binned by their AMR phenotypes, as well as metadata including minimum inhibitory concentrations, to provide an initial framework for species-specific AMR phenotype and genomic feature prediction in the RAST and PATRIC annotation services.