E
Eric K. Nordberg
Researcher at Virginia Bioinformatics Institute
Publications - 22
Citations - 5400
Eric K. Nordberg is an academic researcher from Virginia Bioinformatics Institute. The author has contributed to research in topics: Genome & Bacterial genome size. The author has an hindex of 17, co-authored 22 publications receiving 4318 citations. Previous affiliations of Eric K. Nordberg include University of Maryland, Baltimore & Virginia Tech.
Papers
More filters
Journal ArticleDOI
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Alice R. Wattam,James J. Davis,James J. Davis,Rida Assaf,Sébastien Boisvert,Thomas Brettin,Thomas Brettin,Christopher Bun,Neal Conrad,Neal Conrad,Emily M. Dietrich,Emily M. Dietrich,Terry Disz,Joseph L. Gabbard,Svetlana Gerdes,Christopher S. Henry,Ronald W. Kenyon,Dustin Machi,Chunhong Mao,Eric K. Nordberg,Gary J. Olsen,Daniel E. Murphy-Olson,Robert Olson,Robert Olson,Ross Overbeek,Bruce Parrello,Gordon D. Pusch,Maulik Shukla,Maulik Shukla,Veronika Vonstein,Andrew S. Warren,Fangfang Xia,Fangfang Xia,Hyunseung Yoo,Hyunseung Yoo,Rick Stevens,Rick Stevens +36 more
TL;DR: The Pathosystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center, which provides services for RNA-Seq, variation, model reconstruction and differential expression analysis, all delivered through an updated private workspace.
Journal ArticleDOI
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam,David Abraham,Oral Dalay,Terry Disz,Timothy P. Driscoll,Joseph L. Gabbard,Joseph J. Gillespie,Roger Gough,Deborah Hix,Ronald W. Kenyon,Dustin Machi,Chunhong Mao,Eric K. Nordberg,Robert Olson,Ross Overbeek,Gordon D. Pusch,Maulik Shukla,Julie R. Schulman,Rick Stevens,Daniel E. Sullivan,Veronika Vonstein,Andrew S. Warren,Rebecca Will,Meredith J. C. Wilson,Hyunseung Yoo,Chengdong Zhang,Yan Zhang,Bruno W. S. Sobral +27 more
TL;DR: The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial Bioinformatics Resource Center (BRC) and describes updates to the PATRIC since its initial report in the 2007 NAR Database Issue.
Journal ArticleDOI
Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis
Brett M. Tyler,Sucheta Tripathy,Xuemin Zhang,Paramvir S. Dehal,Paramvir S. Dehal,Rays H. Y. Jiang,Rays H. Y. Jiang,Andrea Aerts,Andrea Aerts,Felipe D. Arredondo,Laura Baxter,Douda Bensasson,Douda Bensasson,Douda Bensasson,Jim Beynon,Jarrod Chapman,Jarrod Chapman,Jarrod Chapman,C. M. B. Damasceno,Anne E. Dorrance,Daolong Dou,Allan W. Dickerman,Inna Dubchak,Inna Dubchak,Matteo Garbelotto,Mark Gijzen,Stuart G. Gordon,Francine Govers,Niklaus J. Grünwald,Wayne Huang,Wayne Huang,Kelly Ivors,Kelly Ivors,Richard W. Jones,Sophien Kamoun,Konstantinos Krampis,Kurt Lamour,Mi-Kyung Lee,W. Hayes McDonald,MoÌnica Medina,Harold J. G. Meijer,Eric K. Nordberg,Donald J. Maclean,Manuel D. Ospina-Giraldo,Paul Morris,Vipaporn Phuntumart,Nicholas H. Putnam,Nicholas H. Putnam,Sam Rash,Sam Rash,Jocelyn K. C. Rose,Yasuko Sakihama,Asaf Salamov,Asaf Salamov,Alon Savidor,Chantel F. Scheuring,Brian M. Smith,Bruno W. S. Sobral,Astrid Terry,Astrid Terry,Trudy Torto-Alalibo,Joe Win,Zhanyou Xu,Hong-Bin Zhang,Igor V. Grigoriev,Igor V. Grigoriev,Daniel S. Rokhsar,Daniel S. Rokhsar,Jeffrey L. Boore +68 more
TL;DR: Comparison of the two species' genomes reveals a rapid expansion and diversification of many protein families associated with plant infection such as hydrolases, ABC transporters, protein toxins, proteinase inhibitors, and, in particular, a superfamily of 700 proteins with similarity to known oömycete avirulence genes.
Journal ArticleDOI
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
James J. Davis,James J. Davis,Alice R. Wattam,Alice R. Wattam,Ramy K. Aziz,Thomas Brettin,Thomas Brettin,Ralph Butler,Ralph Butler,Rory Butler,Philippe Chlenski,Neal Conrad,Neal Conrad,Allan Dickerman,Emily M. Dietrich,Emily M. Dietrich,Joseph L. Gabbard,Svetlana Gerdes,Andrew Guard,Ronald W. Kenyon,Dustin Machi,Chunhong Mao,Daniel E. Murphy-Olson,Daniel E. Murphy-Olson,Marcus Nguyen,Marcus Nguyen,Eric K. Nordberg,Gary J. Olsen,Robert Olson,Robert Olson,Jamie C. Overbeek,Jamie C. Overbeek,Ross Overbeek,Bruce Parrello,Bruce Parrello,Gordon D. Pusch,Maulik Shukla,Maulik Shukla,Chris Thomas,Margo VanOeffelen,Veronika Vonstein,Andrew S. Warren,Fangfang Xia,Fangfang Xia,Dawen Xie,Hyunseung Yoo,Hyunseung Yoo,Rick Stevens,Rick Stevens +48 more
TL;DR: The recent updates to the PATRIC resource are reported, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.
Journal ArticleDOI
Phylogeny of Gammaproteobacteria
Kelly P. Williams,Joseph J. Gillespie,Bruno W. S. Sobral,Eric K. Nordberg,Eric E. Snyder,Joshua M. Shallom,Allan W. Dickerman +6 more
TL;DR: A telescoping multiprotein approach is applied to the phylogeny of the large bacterial class Gammaproteobacteria, based on a set of 356 protein families for the whole class and even larger sets for each of four cohesive subregions of the tree.