R
Ruijie Liu
Researcher at Walter and Eliza Hall Institute of Medical Research
Publications - 22
Citations - 1472
Ruijie Liu is an academic researcher from Walter and Eliza Hall Institute of Medical Research. The author has contributed to research in topics: Cellular differentiation & Population. The author has an hindex of 15, co-authored 22 publications receiving 1134 citations. Previous affiliations of Ruijie Liu include La Trobe University & University of Adelaide.
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Journal ArticleDOI
RNA-seq mixology: designing realistic control experiments to compare protocols and analysis methods.
Aliaksei Holik,Aliaksei Holik,Charity W. Law,Charity W. Law,Ruijie Liu,Zeya Wang,Wenyi Wang,Jaeil Ahn,Marie Liesse Asselin-Labat,Marie Liesse Asselin-Labat,Gordon K. Smyth,Matthew E. Ritchie,Matthew E. Ritchie +12 more
TL;DR: The RNA-sequencing data set provides a valuable resource for benchmarking different protocols and data pre-processing workflows, and the extra noise mimics routine lab experiments more closely, ensuring any conclusions are widely applicable.
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Isolation of tissues and preservation of RNA from intact, germinated barley grain.
Natalie S. Betts,Oliver Berkowitz,Ruijie Liu,Helen Collins,Birgitte Skadhauge,Christoph Dockter,Rachel A. Burton,James Whelan,Geoffrey B. Fincher +8 more
TL;DR: Methods for isolating fragments of aleurone, starchy endosperm, embryo, scutellum, pericarp-testa, husk and crushed cell layers from germinated grain are developed and will be broadly applicable for the interrogation of co-expression and differential expression patterns and for the identification of transcription factors that are important in the early stages of grain and seed germination.
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New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes
Ruijie Liu,Wai Yee Low,Rick Tearle,Sergey Koren,Jay Ghurye,Arang Rhie,Adam M. Phillippy,Benjamin D. Rosen,Derek M. Bickhart,Timothy P. L. Smith,Stefan Hiendleder,John L. Williams +11 more
TL;DR: The first bovine sex chromosome assemblies that include the complete PAR spanning 6.84 Mb and three Y chromosome X-degenerate (X-d) regions are reported and differences in the pseudoautosomal boundaries are consistent with evolutionary divergence times.
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GM3 ganglioside and phosphatidylethanolamine-containing lipids are adipose tissue markers of insulin resistance in obese women.
John M. Wentworth,John M. Wentworth,Gaetano Naselli,Katrina Ngui,Gordon K. Smyth,Gordon K. Smyth,Ruijie Liu,Paul E. O'Brien,Clinton R. Bruce,Jacqui R Weir,Michelle Cinel,Peter J. Meikle,Leonard C. Harrison +12 more
TL;DR: Analysis of the lipid composition of subcutaneous and omental adipose tissue in obese women with and without insulin resistance found an increase in GM3 ganglioside secondary to inflammation may contribute to insulin resistance and a decrease in PEMT may be a compensatory response to adipocyte hypertrophy.
Journal ArticleDOI
Interferon-gamma released from omental adipose tissue of insulin-resistant humans alters adipocyte phenotype and impairs response to insulin and adiponectin release
John M. Wentworth,Jian-Guo Zhang,Jian-Guo Zhang,Esther Bandala-Sanchez,Esther Bandala-Sanchez,Gaetano Naselli,Gaetano Naselli,Ruijie Liu,Matthew E. Ritchie,Matthew E. Ritchie,Gordon K. Smyth,Gordon K. Smyth,Paul E. O'Brien,Leonard C. Harrison,Leonard C. Harrison +14 more
TL;DR: IFN-γ released from inflamed omental adipose tissue may contribute to the metabolic abnormalities seen in human obesity.