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Shadi Shokralla
Researcher at University of Guelph
Publications - 58
Citations - 4583
Shadi Shokralla is an academic researcher from University of Guelph. The author has contributed to research in topics: DNA barcoding & Chemistry. The author has an hindex of 26, co-authored 48 publications receiving 3856 citations. Previous affiliations of Shadi Shokralla include Mansoura University & Stanford University.
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Journal ArticleDOI
Next-generation sequencing technologies for environmental DNA research.
TL;DR: The advantages and limitations of current next‐generation sequencing technologies in regard to their application for environmental DNA analysis are reviewed.
Journal ArticleDOI
Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos.
TL;DR: The results indicate the potential of an environmental barcoding approach for biomonitoring programs and show the ability of 454 pyrosequencing of mini-barcodes to accurately identify all species with more than 1% abundance in the pooled mixture.
Journal ArticleDOI
A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing
Poornima Parameswaran,Roxana Jalili,Li Tao,Shadi Shokralla,Baback Gharizadeh,Mostafa Ronaghi,Andrew Fire +6 more
TL;DR: A novel barcoding approach is devised to allow for pooling and sequencing of DNA from independent samples, and to facilitate subsequent segregation of sequencing capacity.
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Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics
Joel F. Gibson,Shadi Shokralla,Shadi Shokralla,Teresita M. Porter,Ian King,Steven van Konynenburg,Daniel H. Janzen,Winnie Hallwachs,Mehrdad Hajibabaei +8 more
TL;DR: It is shown that next-generation sequencing (NGS) of cytochrome c oxidase subunit I (COI) DNA barcodes can accurately detect 83.5% of individually sequenced species in a bulk sample of terrestrial arthropods from a Costa Rican species-rich site.
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Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease
Walid Mottawea,Cheng-Kang Chiang,Marcus Mühlbauer,Amanda E. Starr,James Butcher,Turki S. Abujamel,Shelley A. Deeke,Annette Brandel,Hu Zhou,Shadi Shokralla,Mehrdad Hajibabaei,Ruth Singleton,Eric I Benchimol,Eric I Benchimol,Christian Jobin,David R. Mack,David R. Mack,Daniel Figeys,Alain Stintzi +18 more
TL;DR: The system-level approach to study the interactions between the gut microbiota and host in new-onset paediatric patients reveals that host–microbiota interactions are disturbed in CD and thus provides mechanistic insights into CD pathogenesis.