S
Simon Jupp
Researcher at European Bioinformatics Institute
Publications - 73
Citations - 3070
Simon Jupp is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Ontology (information science) & Semantic Web. The author has an hindex of 22, co-authored 70 publications receiving 2081 citations. Previous affiliations of Simon Jupp include University of Manchester & Wellcome Trust.
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Journal ArticleDOI
Using Ontologies and Vocabularies for Dynamic Linking
TL;DR: Conceptual hypermedia provides navigation between Web resources, supported by a conceptual model, in which an ontology's definitions and structure, together with the lexical labels, drive the consistency of link provision and the linking's dynamic aspects.
Journal ArticleDOI
Harmonising phenomics information for a better interoperability in the rare disease field
Sylvie Maiella,Annie Olry,Marc Hanauer,Valérie Lanneau,Halima Lourghi,Bruno Donadille,Charlotte Rodwell,Sebastian Köhler,Dominik Seelow,Simon Jupp,Helen Parkinson,Tudor Groza,Michael Brudno,Peter N. Robinson,Ana Rath +14 more
TL;DR: The HIPBI-RD ecosystem will contribute to the interpretation of variants identified through exome and full genome sequencing by harmonising the way phenotypic information is collected, thus improving diagnostics and delineation of RD.
Journal ArticleDOI
A user-centred evaluation framework for the Sealife semantic web browsers
Helen Oliver,Gayo Diallo,Ed de Quincey,Dimitra Alexopoulou,Bianca Habermann,Patty Kostkova,Michael Schroeder,Simon Jupp,Khaled Khelif,Robert Stevens,Gawesh Jawaheer,Gemma Madle +11 more
TL;DR: A user-centred evaluation framework was developed to evaluate the Sealife SWBs that elicited feedback on users' perceptions on ease of use and information findability and found that the browser with the most mature and polished interface was rated higher for usability and semantic links were used by the users of all three browsers.
Journal ArticleDOI
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
TL;DR: This standard use of OWL affords a rich interaction with Gene Ontology, Human Disease Ontology and Mammalian Phenotype Ontology annotations for the mouse, to give a fine partitioning of the gene products in the GOAL ontology.
Book ChapterDOI
A Flexible API and Editor for SKOS
TL;DR: The SKOS editor (SKOSEd) as discussed by the authors is built on the Protege 4 framework using the OWL and SKOS API, but it is restricted to OWL-DL.