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Thomas F. Cooke
Researcher at Stanford University
Publications - 10
Citations - 930
Thomas F. Cooke is an academic researcher from Stanford University. The author has contributed to research in topics: Jasmonate & Population. The author has an hindex of 8, co-authored 10 publications receiving 789 citations. Previous affiliations of Thomas F. Cooke include Michigan State University & Massachusetts Institute of Technology.
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Journal ArticleDOI
Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-L-isoleucine.
TL;DR: It is demonstrated that CYP94B3 exerts negative feedback control on JA-Ile levels and performs a key role in attenuation of jasmonate responses, as well as in promoting the formation of COI1-JAZ receptor complexes.
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JAZ8 Lacks a Canonical Degron and Has an EAR Motif That Mediates Transcriptional Repression of Jasmonate Responses in Arabidopsis
Christine Shyu,Pablo Figueroa,Cody L. DePew,Thomas F. Cooke,Laura B. Sheard,Javier E. Moreno,Leron Katsir,Ning Zheng,John Browse,Gregg A. Howe +9 more
TL;DR: It is shown that sequence variation in a hypervariable region of the degron affects JAZ stability and JA-regulated physiological responses, and that JAZ8 is stabilized against jasmonate (JA)-mediated degradation and, when ectopically expressed in Arabidopsis, repressesJA-regulated growth and defense responses.
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Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling
Hoo Sun Chung,Thomas F. Cooke,Cody L. DePew,Lalita C. Patel,Narihito Ogawa,Yuichi Kobayashi,Gregg A. Howe +6 more
TL;DR: It is proposed that production of dominant JAZ repressors by alternative splicing reduces the negative consequences associated with inappropriate or hyperactivation of the JA response pathway.
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Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing
Kyle M. Gardner,Patrick J. Brown,Thomas F. Cooke,Scott Cann,F. Costa,Carlos Bustamante,Riccardo Velasco,Michela Troggio,Sean Myles +8 more
TL;DR: It is demonstrated that GBS is a cost-effective method for generating genome-wide SNP data suitable for genetic mapping in a highly diverse and heterozygous agricultural species and future improvements to the GBS analysis pipeline presented here will enhance the utility of next-generation DNA sequence data for the purposes of genetic mapping across diverse species.
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Genetic mapping and biochemical basis of yellow feather pigmentation in budgerigars
Thomas F. Cooke,Curt R. Fischer,Ping Wu,Ting-Xin Jiang,Kathleen T. Xie,James Kuo,Elizabeth Doctorov,Ashley M. Zehnder,Chaitan Khosla,Cheng-Ming Chuong,Cheng-Ming Chuong,Cheng-Ming Chuong,Carlos Bustamante +12 more
TL;DR: This work uses genome-wide association mapping and gene-expression analysis to map the Mendelian blue locus, which abolishes yellow pigmentation in the budgerigar, and finds that the blue trait maps to a single amino acid substitution (R644W) in an uncharacterized polyketide synthase (MuPKS).