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Thomas F. Cooke

Researcher at Stanford University

Publications -  10
Citations -  930

Thomas F. Cooke is an academic researcher from Stanford University. The author has contributed to research in topics: Jasmonate & Population. The author has an hindex of 8, co-authored 10 publications receiving 789 citations. Previous affiliations of Thomas F. Cooke include Michigan State University & Massachusetts Institute of Technology.

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Cytochrome P450 CYP94B3 mediates catabolism and inactivation of the plant hormone jasmonoyl-L-isoleucine.

TL;DR: It is demonstrated that CYP94B3 exerts negative feedback control on JA-Ile levels and performs a key role in attenuation of jasmonate responses, as well as in promoting the formation of COI1-JAZ receptor complexes.
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JAZ8 Lacks a Canonical Degron and Has an EAR Motif That Mediates Transcriptional Repression of Jasmonate Responses in Arabidopsis

TL;DR: It is shown that sequence variation in a hypervariable region of the degron affects JAZ stability and JA-regulated physiological responses, and that JAZ8 is stabilized against jasmonate (JA)-mediated degradation and, when ectopically expressed in Arabidopsis, repressesJA-regulated growth and defense responses.
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Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling

TL;DR: It is proposed that production of dominant JAZ repressors by alternative splicing reduces the negative consequences associated with inappropriate or hyperactivation of the JA response pathway.
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Fast and Cost-Effective Genetic Mapping in Apple Using Next-Generation Sequencing

TL;DR: It is demonstrated that GBS is a cost-effective method for generating genome-wide SNP data suitable for genetic mapping in a highly diverse and heterozygous agricultural species and future improvements to the GBS analysis pipeline presented here will enhance the utility of next-generation DNA sequence data for the purposes of genetic mapping across diverse species.
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Genetic mapping and biochemical basis of yellow feather pigmentation in budgerigars

TL;DR: This work uses genome-wide association mapping and gene-expression analysis to map the Mendelian blue locus, which abolishes yellow pigmentation in the budgerigar, and finds that the blue trait maps to a single amino acid substitution (R644W) in an uncharacterized polyketide synthase (MuPKS).