T
Trent C. Bjorndahl
Researcher at University of Alberta
Publications - 27
Citations - 4491
Trent C. Bjorndahl is an academic researcher from University of Alberta. The author has contributed to research in topics: Docking (molecular) & Metabolome. The author has an hindex of 15, co-authored 27 publications receiving 3934 citations. Previous affiliations of Trent C. Bjorndahl include International Agency for Research on Cancer.
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Journal ArticleDOI
HMDB 3.0—The Human Metabolome Database in 2013
David S. Wishart,Timothy Jewison,An Chi Guo,Michael Wilson,Craig Knox,Yifeng Liu,Yannick Djoumbou,Rupasri Mandal,Farid Aziat,Edison Dong,Souhaila Bouatra,Igor Sinelnikov,David Arndt,Jianguo Xia,Philip Liu,Faizath S. Yallou,Trent C. Bjorndahl,Rolando Perez-Pineiro,Roman Eisner,Felicity Allen,Vanessa Neveu,Russell Greiner,Augustin Scalbert +22 more
TL;DR: New database visualization tools and new data content have been added or enhanced to the HMDB, which includes better spectral viewing tools, more powerful chemical substructure searches, an improved chemical taxonomy and better, more interactive pathway maps.
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The Human Urine Metabolome
Souhaila Bouatra,Farid Aziat,Rupasri Mandal,An Chi Guo,Michael Wilson,Craig Knox,Trent C. Bjorndahl,Ramanarayan Krishnamurthy,Fozia Saleem,Philip B. Liu,Zerihun T. Dame,Jenna Poelzer,Jessica Huynh,Faizath S. Yallou,Nick Psychogios,Edison Dong,Ralf Bogumil,Cornelia Roehring,David S. Wishart,David S. Wishart +19 more
TL;DR: A comprehensive, quantitative, metabolome-wide characterization of human urine and the identification and annotation of several previously unknown urine metabolites and to substantially enhance the level of metabolome coverage are undertaken.
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Metabolomic Fingerprint of Heart Failure with Preserved Ejection Fraction
Beshay N M Zordoky,Miranda M. Sung,Justin A. Ezekowitz,Rupasri Mandal,Beomsoo Han,Trent C. Bjorndahl,Souhaila Bouatra,Todd J. Anderson,Gavin Y. Oudit,David S. Wishart,Jason R.B. Dyck,Alberta Heart +11 more
TL;DR: A unique metabolomic fingerprint was identified of HFpEF that is distinct from that of HFrEF that will help understand its pathophysiology and assist in establishing new biomarkers for its diagnosis.
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Probing the Structural Determinants of Type II‘ β-Turn Formation in Peptides and Proteins
TL;DR: The structural determinants of type II' beta-turns were probed through a comprehensive CD, NMR, and molecular dynamics analysis of 10 specially designed beta-hairpin peptides and it is demonstrated that backbone heterochirality, which determines equatorial and axial side-chain orientation at the i+1 and i+2 residues oftype II' turns, may account for up to 60% ofType II' Beta-turn stabilization.
Journal ArticleDOI
Detailed Biophysical Characterization of the Acid-Induced PrPc to PrPβ Conversion Process
Trent C. Bjorndahl,Guo-Ping Zhou,Xuehui Liu,Rolando Perez-Pineiro,Valentyna Semenchenko,Fozia Saleem,Sandipta Acharya,Adina Bujold,Constance A. Sobsey,David S. Wishart +9 more
TL;DR: It is found that acid-induced PrP(β) oligomers could be converted to fibrils without the use of chaotropic denaturants, and this finding represents one of the first examples wherein physiologically accessible conditions were used to achieve PrP conversion and fibril formation.