T
Typhaine Paysan-Lafosse
Researcher at European Bioinformatics Institute
Publications - 11
Citations - 3717
Typhaine Paysan-Lafosse is an academic researcher from European Bioinformatics Institute. The author has contributed to research in topics: Protein Data Bank & UniProt. The author has an hindex of 8, co-authored 8 publications receiving 1884 citations. Previous affiliations of Typhaine Paysan-Lafosse include University of Montpellier.
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Journal ArticleDOI
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Alex L. Mitchell,Teresa K. Attwood,Patricia C. Babbitt,Matthias Blum,Peer Bork,Alan Bridge,Shoshana D. Brown,Hsin-Yu Chang,Sara El-Gebali,Matthew Fraser,Julian Gough,David R. Haft,Hongzhan Huang,Ivica Letunic,Rodrigo Lopez,Aurelien Luciani,Fábio Madeira,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Marco Necci,Marco Necci,Gift Nuka,Christine A. Orengo,Arun Prasad Pandurangan,Typhaine Paysan-Lafosse,Sebastien Pesseat,Simon C. Potter,Matloob Qureshi,Neil D. Rawlings,Nicole Redaschi,Lorna Richardson,Catherine Rivoire,Gustavo A. Salazar,Amaia Sangrador-Vegas,Christian J. A. Sigrist,Ian Sillitoe,Granger G. Sutton,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Siew-Yit Yong,Robert D. Finn +42 more
TL;DR: Recent developments with InterPro (version 70.0) and its associated software are reported, including an 18% growth in the size of the database in terms on new InterPro entries, updates to content, the inclusion of an additional entry type, refined modelling of discontinuous domains, and the development of a new programmatic interface and website.
Journal ArticleDOI
The InterPro protein families and domains database: 20 years on.
Matthias Blum,Hsin-Yu Chang,Sara Chuguransky,Tiago Grego,Swaathi Kandasaamy,Alex L. Mitchell,Gift Nuka,Typhaine Paysan-Lafosse,Matloob Qureshi,Shriya Raj,Lorna Richardson,Gustavo A. Salazar,Lowri Williams,Peer Bork,Alan Bridge,Julian Gough,Daniel H. Haft,Ivica Letunic,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Marco Necci,Christine A. Orengo,Arun Prasad Pandurangan,Catherine Rivoire,Christian J. A. Sigrist,Ian Sillitoe,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Cathy H. Wu,Alex Bateman,Robert D. Finn +32 more
TL;DR: The status of InterPro (version 81.0) in its 20th year of operation, and its associated software, is reported, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.
Journal ArticleDOI
Protein Data Bank: the single global archive for 3D macromolecular structure data
Stephen K. Burley,Helen M. Berman,Charmi Bhikadiya,Chunxiao Bi,Li Chen,Luigi Di Costanzo,Cole Christie,Jose M. Duarte,Shuchismita Dutta,Zukang Feng,Sutapa Ghosh,David S. Goodsell,Rachel Kramer Green,Vladimir Guranovic,Dmytro Guzenko,Brian P. Hudson,Yu-He Liang,Robert Lowe,Ezra Peisach,Irina Periskova,Chris Randle,Alexander S. Rose,Monica Sekharan,Chenghua Shao,Yi-Ping Tao,Yana Valasatava,Maria Voigt,John D. Westbrook,Jasmine Young,Christine Zardecki,Marina A. Zhuravleva,Genji Kurisu,Haruki Nakamura,Yumiko Kengaku,Hasumi Cho,Junko Sato,Ju Yaen Kim,Yasuyo Ikegawa,Atsushi Nakagawa,Reiko Yamashita,Takahiro Kudou,Gert-Jan Bekker,Hirofumi Suzuki,Takeshi Iwata,Masashi Yokochi,Naohiro Kobayashi,Toshimichi Fujiwara,Sameer Velankar,Gerard J. Kleywegt,Stephen Anyango,David R. Armstrong,John M. Berrisford,Matthew J. Conroy,Jose M. Dana,Mandar Deshpande,Paul Gane,Romana Gáborová,Deepti Gupta,Aleksandras Gutmanas,Jaroslav Koča,Lora Mak,Saqib Mir,Abhik Mukhopadhyay,Nurul Nadzirin,Sreenath Nair,Ardan Patwardhan,Typhaine Paysan-Lafosse,Lukáš Pravda,Osman Salih,David Sehnal,Mihaly Varadi,Radka Svobodová Vařeková,John L. Markley,Jeffrey C. Hoch,Pedro Romero,Kumaran Baskaran,Dimitri Maziuk,Eldon L. Ulrich,Jonathan R. Wedell,Hongyang Yao,Miron Livny,Yannis Ioannidis +81 more
TL;DR: Impacts of the recently developed universal wwPDB OneDep deposition/validation/biocuration system and various methods-specific ww PDB Validation Task Forces on improving the quality of structures and data housed in the PDB Core Archive are described together with current challenges and future plans.
Journal ArticleDOI
IMGT®, the international ImMunoGeneTics information system® 25 years on
Marie-Paule Lefranc,Véronique Giudicelli,Patrice Duroux,Joumana Jabado-Michaloud,Géraldine Folch,Safa Aouinti,Emilie Carillon,Hugo Duvergey,Amélie Houles,Typhaine Paysan-Lafosse,Saida Hadi-Saljoqi,Souphatta Sasorith,Gérard Lefranc,Sofia Kossida +13 more
TL;DR: IMGT®, the international ImMunoGeneTics information system, is the global reference in immunogenetics and immunoinformatics and provides a high-quality and integrated system for analysis of the genomic and expressed IG and TR repertoire of the adaptive immune responses, including NGS high-throughput data.
Journal ArticleDOI
InterPro in 2022
Typhaine Paysan-Lafosse,Matthias Blum,Sara Chuguransky,Tiago Daniel Pereira Grego,Beatriz Pinto,Gustavo A. Salazar,Maxwell L. Bileschi,Peer Bork,Alan Bridge,Lucy J. Colwell,Julian Gough,Daniel H. Haft,Ivica Letunic,Aron Marchler-Bauer,Huaiyu Mi,Darren A. Natale,Christine A. Orengo,Arun Prasad Pandurangan,Catherine Rivoire,Christian J. A. Sigrist,Ian Sillitoe,Narmada Thanki,Paul Thomas,Silvio C. E. Tosatto,Cathy H. Wu,Alex Bateman +25 more
TL;DR: The InterPro database as discussed by the authors provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites, and provides a more user friendly access to the data.