V
Vivian H. Gersuk
Researcher at Benaroya Research Institute
Publications - 53
Citations - 6905
Vivian H. Gersuk is an academic researcher from Benaroya Research Institute. The author has contributed to research in topics: Immune system & Antigen. The author has an hindex of 24, co-authored 48 publications receiving 5188 citations. Previous affiliations of Vivian H. Gersuk include Virginia Mason Medical Center.
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Journal ArticleDOI
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
Greg Finak,Andrew McDavid,Masanao Yajima,Jingyuan Deng,Vivian H. Gersuk,Alex K. Shalek,Chloe K. Slichter,Hannah W. Miller,M. Juliana McElrath,Martin Prlic,Peter S. Linsley,Raphael Gottardo +11 more
TL;DR: This work argues that the cellular detection rate, the fraction of genes expressed in a cell, should be adjusted for as a source of nuisance variation and provides gene set enrichment analysis tailored to single-cell data.
Journal ArticleDOI
Induction of FoxP3 and acquisition of T regulatory activity by stimulated human CD4 + CD25 – T cells
Mindi R. Walker,Deborah J. Kasprowicz,Vivian H. Gersuk,Angèle Bénard,Megan Van Landeghen,Jane H. Buckner,Steven F. Ziegler +6 more
TL;DR: Human TR cells were examined and, in results similar to those of studies done in mice, expression of FoxP3 was found exclusively in CD4+CD25+ T cells and correlated with the suppressive activity of these cells, raising the possibility that a failure to generate peripheral TR cells properly may contribute to autoimmune disease.
Induction of FoxP3 and acquisition of T regulatory activity by stimulated
Deborah J. Kasprowicz,Vivian H. Gersuk,Angèle Bénard,Megan Van Landeghen,Jane H. Buckner,Steven F. Ziegler +5 more
TL;DR: In this paper, a negative selection mechanism was used to eliminate potentially autoreactive clones in the thymus of T cells through elimination of potentially auto-active clones through negative selection.
Posted ContentDOI
MAST: A flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA-seq data
Greg Finak,Andrew McDavid,Masanao Yajima,Jingyuan Deng,Vivian H. Gersuk,Alex K. Shalek,Chloe K. Slichter,Hannah W. Miller,M. Juliana McElrath,Martin Prlic,Peter S. Linsley,Raphael Gottardo +11 more
TL;DR: A new methodology to analyze single-cell transcriptomic data is presented that models this bimodality within a coherent generalized linear modeling framework, and the cellular detection rate, the fraction of genes turned on in a cell, is introduced.
Journal ArticleDOI
Modular Transcriptional Repertoire Analyses of Adults With Systemic Lupus Erythematosus Reveal Distinct Type I and Type II Interferon Signatures
Laurent Chiche,Noémie Jourde-Chiche,Elizabeth Whalen,Scott R. Presnell,Vivian H. Gersuk,Kristen K. Dang,Esperanza Anguiano,Charlie Quinn,Stéphane Burtey,Yvon Berland,Gilles Kaplanski,Jean Robert Harlé,Virginia Pascual,Damien Chaussabel +13 more
TL;DR: The aim of this study was to improve characterization of the blood IFN signature in adult SLE patients.