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Xiaofeng Zhang
Researcher at Chinese Academy of Fishery Sciences
Publications - 34
Citations - 2197
Xiaofeng Zhang is an academic researcher from Chinese Academy of Fishery Sciences. The author has contributed to research in topics: Common carp & Quantitative trait locus. The author has an hindex of 18, co-authored 34 publications receiving 1864 citations. Previous affiliations of Xiaofeng Zhang include Chinese Academy of Sciences.
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Journal ArticleDOI
SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing
Xiaowen Sun,Dongyuan Liu,Xiaofeng Zhang,Wenbin Li,Hui Liu,Weiguo Hong,Chuanbei Jiang,Ning Guan,Chouxian Ma,Huaping Zeng,Chunhua Xu,Jun Song,Long Huang,Chunmei Wang,Junjie Shi,Rui Wang,Xianhu Zheng,Cuiyun Lu,Xiaowu Wang,Hongkun Zheng +19 more
TL;DR: This study reports the highest density genetic map yet created for any organism without a reference genome sequence, common carp in this case, using SLAF-seq data, and provides a high-resolution strategy for large-scale genotyping that can be generally applicable to various species and populations.
Journal ArticleDOI
Genome sequence and genetic diversity of the common carp, Cyprinus carpio.
Peng Xu,Xiaofeng Zhang,Xumin Wang,Jiong-Tang Li,Guiming Liu,Youyi Kuang,Jian Xu,Xianhu Zheng,Lufeng Ren,Guoliang Wang,Yan Zhang,Linhe Huo,Zixia Zhao,Dingchen Cao,Cuiyun Lu,Chao Li,Yi Zhou,Zhanjiang Liu,Zhonghua Fan,Guangle Shan,Xingang Li,Shuangxiu Wu,Lipu Song,Guang-Yuan Hou,Yanliang Jiang,Zsigmond Jeney,Dan Yu,Li Wang,Shao Changjun,Lai Song,Sun Jing,Peifeng Ji,Jian Wang,Qiang Li,Liming Xu,Fanyue Sun,Jianxin Feng,Chenghui Wang,Shaolin Wang,Baosen Wang,Yan Li,Ya-Ping Zhu,Wei Xue,Lan Zhao,Jintu Wang,Ying Gu,Weihua Lv,Kejing Wu,Jingfa Xiao,Jiayan Wu,Zhang Zhang,Jun Yu,Xiaowen Sun +52 more
TL;DR: A draft genome of domesticated C. carpio (strain Songpu) is presented, whose current assembly contains 52,610 protein-coding genes and approximately 92.3% coverage of its paleotetraploidized genome (2n = 100).
Journal ArticleDOI
Characterization of Common Carp Transcriptome: Sequencing, De Novo Assembly, Annotation and Comparative Genomics
Peifeng Ji,Guiming Liu,Jian Xu,Xumin Wang,Jiong-Tang Li,Zixia Zhao,Xiaofeng Zhang,Yan Zhang,Peng Xu,Xiaowen Sun +9 more
TL;DR: The transcriptome of common carp had been deep sequenced, de novo assembled and characterized, providing the valuable resource for better understanding of common carpet genome.
Journal ArticleDOI
Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio)
TL;DR: This study sequenced the transcriptome of common carp and annotated the common carp contigs with Gene Ontology terms and KEGG pathways, finding that a set of biological processes and pathways were enriched in common carp.
Journal ArticleDOI
Development and evaluation of the first high-throughput SNP array for common carp ( Cyprinus carpio )
Jian Xu,Zixia Zhao,Xiaofeng Zhang,Xianhu Zheng,Jiong-Tang Li,Yanliang Jiang,Youyi Kuang,Yan Zhang,Jianxin Feng,Chuangju Li,Ju-Hua Yu,Qiang Li,Yuanyuan Zhu,Liu Yuanyuan,Peng Xu,Peng Xu,Xiaowen Sun +16 more
TL;DR: The Carp SNP array described here is the first high-throughput genotyping platform for C. carpio and indicates that it will be valuable for farmed carp and for genetic and population biology studies in C. carpetio and related species.