Jingfa Xiao

TL;DR: A draft genome of domesticated C. carpio (strain Songpu) is presented, whose current assembly contains 52,610 protein-coding genes and approximately 92.3% coverage of its paleotetraploidized genome (2n = 100).

TL;DR: In the era of big data, GSA is not only an important complement to existing INSDC members by alleviating the increasing burdens of handling sequence data deluge, but also takes the significant responsibility for global big data archive and provides free unrestricted access to all publicly available data in support of research activities throughout the world.

TL;DR: A new pan-genome analysis pipeline (PGAP), which can perform five analytic functions with only one command, including cluster analysis of functional genes, pan- Genome profile analysis, genetic variation analysis offunctional genes, species evolution analysis and function enrichment analysis of gene clusters is developed.

TL;DR: A parallel tool - ParaAT that is capable of parallelly constructing multiple protein-coding DNA alignments for a large number of homologs and providing good scalability and exhibiting high parallel efficiency for computationally demanding tasks is presented.

TL;DR: The Genome Sequence Archive (GSA) as discussed by the authors is a data repository for archiving raw sequence data, which provides data storage and sharing services for worldwide scientific communities, considering explosive data growth with diverse data types, here we present the GSA family by expanding into a set of resources for raw data archive with different purposes.