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Xuming Li
Researcher at Huazhong Agricultural University
Publications - 25
Citations - 1243
Xuming Li is an academic researcher from Huazhong Agricultural University. The author has contributed to research in topics: Genome & Sequence assembly. The author has an hindex of 11, co-authored 20 publications receiving 690 citations. Previous affiliations of Xuming Li include Shanghai Jiao Tong University.
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Journal ArticleDOI
The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection
Jinghua Yang,Dongyuan Liu,Xiaowu Wang,Changmian Ji,Feng Cheng,Baoning Liu,Zhongyuan Hu,Sheng Chen,Deepak Pental,Youhui Ju,Pu Yao,Xuming Li,Kun Xie,Jianhui Zhang,Jianlin Wang,Fan Liu,Weiwei Ma,Jannat Shopan,Hongkun Zheng,Sally A. Mackenzie,Mingfang Zhang +20 more
TL;DR: An allopolyploid Brassica juncea genome was assembled by shotgun and single-molecule reads integrated to genomic and genetic maps and it was discovered that the A subgenomes of B.juncea and Brassica napus each had independent origins.
Journal ArticleDOI
Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies.
Lei Zhang,Xu Cai,Jian Wu,Min Liu,Stefan Grob,Feng Cheng,Jianli Liang,Chengcheng Cai,Zhiyuan Liu,Bo Liu,Fan Wang,Song Li,Fuyan Liu,Xuming Li,Lin Cheng,Wencai Yang,Mai-He Li,Ueli Grossniklaus,Hongkun Zheng,Xiaowu Wang +19 more
TL;DR: An improved assembly of the B. rapa genome (v3.0) is reported using single-molecule sequencing, optical mapping, and chromosome conformation capture technologies (Hi-C), which provide a significant improvement in the level of detail, and permit mapping of highly repetitive regions, which were nearly impossible to map using older methods.
Journal ArticleDOI
Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence
Dezhi Wu,Zhe Liang,Tao Yan,Ying Xu,Lijie Xuan,Juan Tang,Gang Zhou,Ulrike Lohwasser,Shuijin Hua,Haoyi Wang,Xiaoyang Chen,Qian Wang,Le Zhu,Antony Maodzeka,Nazim Hussain,Zhilan Li,Xuming Li,Imran Haider Shamsi,Ghulam Jilani,Linde Wu,Hongkun Zheng,Guoping Zhang,Boulos Chalhoub,Lisha Shen,Hao Yu,Lixi Jiang +25 more
TL;DR: The global pattern of genetic polymorphisms in rapeseed determined by resequencing a worldwide collection of germplasm accessions is reported, providing important insights into the genomic footprints of rapeseed evolution and flowering-time divergence among three ecotype groups, and will facilitate screening of molecular markers for accelerating rapeseed breeding.
Journal ArticleDOI
A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes.
Guangwei Li,Lijian Wang,Jianping Yang,Hang He,Huaibing Jin,Xuming Li,Tianheng Ren,Zhenglong Ren,Feng Li,Xue Han,Xiaoge Zhao,Lingli Dong,Yiwen Li,Zhongping Song,Ze-Hong Yan,Nannan Zheng,Cuilan Shi,Zhaohui Wang,Shuling Yang,Zijun Xiong,Menglan Zhang,Guanghua Sun,Xu Zheng,Mingyue Gou,Changmian Ji,Junkai Du,Hongkun Zheng,Jaroslav Doležel,Xing Wang Deng,Nils Stein,Nils Stein,Qinghua Yang,Kunpu Zhang,Kunpu Zhang,Daowen Wang,Daowen Wang +35 more
TL;DR: In this paper, the genome of Weining rye, an elite Chinese rye variety, was sequenced and the assembled contigs (7.74 Gb) accounted for 98.47% of the estimated genome size with 93.67% assigned to seven chromosomes.
Journal ArticleDOI
A Chromosome-Scale Genome Assembly of Paper Mulberry (Broussonetia papyrifera) Provides New Insights into Its Forage and Papermaking Usage
Xianjun Peng,Hui Liu,Peilin Chen,Feng Tang,Yanmin Hu,Fenfen Wang,Zhi Pi,Meiling Zhao,Naizhi Chen,Hui Chen,Xiaokang Zhang,Xueqing Yan,Min Liu,Xiaojun Fu,Guofeng Zhao,Pu Yao,Lili Wang,He Dai,Xuming Li,Wei Xiong,Wencai Xu,Hongkun Zheng,Haiyan Yu,Shihua Shen +23 more
TL;DR: The results suggest that Paper mulberry might have undergone adaptive evolution and recruited nitrogen-fixing microbes to promote growth by enhancing flavonoid production and altering lignin monomer composition.