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Yao Xu

Researcher at Vanderbilt University

Publications -  39
Citations -  3410

Yao Xu is an academic researcher from Vanderbilt University. The author has contributed to research in topics: Circadian clock & KaiA. The author has an hindex of 21, co-authored 36 publications receiving 3103 citations.

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Peroxiredoxins are conserved markers of circadian rhythms

TL;DR: It is shown that oxidation–reduction cycles of peroxiredoxin proteins constitute a universal marker for circadian rhythms in all domains of life, by characterizing their oscillations in a variety of model organisms and exploring the interconnectivity between these metabolic cycles and transcription–translation feedback loops of the clockwork in each system.
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A bioluminescence resonance energy transfer (BRET) system: Application to interacting circadian clock proteins

TL;DR: The BRET technique is used to demonstrate that the clock protein KaiB interacts to form homodimers, and should be particularly useful for testing protein interactions within native cells, especially with integral membrane proteins or proteins targeted to specific organelles.
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Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC.

TL;DR: It is concluded that the circadian period in cyanobacteria is determined by the phosphorylation status of KaiC and also by the degradation rate of Kai C, which is integrated into a model proposing rhythmic changes in chromosomal status.
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Visualizing a circadian clock protein: crystal structure of KaiC and functional insights.

TL;DR: The crystal structure of KaiC reveals ATP binding, inter-subunit organization, a scaffold for Kai-protein complex formation, the location of critical KaiC mutations, and evolutionary relationships to other proteins.
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Non-optimal codon usage is a mechanism to achieve circadian clock conditionality

TL;DR: This work shows that in the cyanobacterium Synechococcus elongate, non-optimal codon usage was selected as a post-transcriptional mechanism to switch between circadian and non-circadian regulation of gene expression as an adaptive response to environmental conditions, and challenges the long-standing view of directional selection towards optimal codons.