Y
Yutaka Yamada
Publications - 21
Citations - 1843
Yutaka Yamada is an academic researcher. The author has contributed to research in topics: Metabolite & Metabolome. The author has an hindex of 11, co-authored 20 publications receiving 1153 citations.
Papers
More filters
Journal ArticleDOI
Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids
Ryo Nakabayashi,Keiko Yonekura-Sakakibara,Kaoru Urano,Makoto Suzuki,Yutaka Yamada,Tomoko Nishizawa,Fumio Matsuda,Mikiko Kojima,Hitoshi Sakakibara,Kazuo Shinozaki,Anthony J. Michael,Takayuki Tohge,Mami Yamazaki,Kazuki Saito +13 more
TL;DR: Antioxidative activity assays showed that anthocyanin overaccumulation with strong in vitro antioxidative activity mitigated the accumulation of reactive oxygen species in vivo under oxidative and drought stress, confirming the usefulness of flavonoids for enhancing both biotic and abiotic stress tolerance in crops.
Journal ArticleDOI
A lipidome atlas in MS-DIAL 4.
Hiroshi Tsugawa,Kazutaka Ikeda,Mikiko Takahashi,Aya O. Satoh,Yoshifumi Mori,Haruki Uchino,Nobuyuki Okahashi,Yutaka Yamada,Ipputa Tada,Paolo Bonini,Yasuhiro Higashi,Yozo Okazaki,Zhiwei Zhou,Zheng-Jiang Zhu,Jeremy P. Koelmel,Jeremy P. Koelmel,Tomas Cajka,Oliver Fiehn,Kazuki Saito,Masanori Arita,Makoto Arita,Makoto Arita +21 more
TL;DR: A comprehensive lipidome atlas with retention time, collision cross-section and tandem mass spectrometry information is presented and mass spectral fragmentations of lipids across 117 lipid subclasses are presented in a lipidomeAtlas.
Journal ArticleDOI
RIKEN tandem mass spectral database (ReSpect) for phytochemicals: a plant-specific MS/MS-based data resource and database.
Yuji Sawada,Ryo Nakabayashi,Yutaka Yamada,Makoto Suzuki,Muneo Sato,Akane Sakata,Kenji Akiyama,Tetsuya Sakurai,Fumio Matsuda,Toshio Aoki,Masami Yokota Hirai,Kazuki Saito +11 more
TL;DR: A case study was conducted for the annotation of untargeted MS/MS data that were selected after quantitative trait locus analysis of the accessions of a model legume Lotus japonicus, and unknown metabolites were successfully narrowed down to putative structures in the website.
Journal ArticleDOI
A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms
Hiroshi Tsugawa,Ryo Nakabayashi,Tetsuya Mori,Yutaka Yamada,Mikiko Takahashi,Amit Rai,Ryosuke Sugiyama,Hiroyuki Yamamoto,Taiki Nakaya,Mami Yamazaki,Rik Kooke,Johanna A. Bac-Molenaar,Nihal Oztolan-Erol,Joost J. B. Keurentjes,Masanori Arita,Kazuki Saito +15 more
TL;DR: A computational approach facilitates molecular formula, metabolite class, and structure assignment for plant metabolites on the basis of LC–MS analysis of fully 13C-labeled and unlabeled plants.
Journal ArticleDOI
PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation.
Tetsuya Sakurai,Yutaka Yamada,Yuji Sawada,Fumio Matsuda,Fumio Matsuda,Kenji Akiyama,Kazuo Shinozaki,Masami Yokota Hirai,Kazuki Saito +8 more
TL;DR: The ReSpect database, a plant-specific MS/MS data resource, which allows users to identify candidate structures from the suite of complex phytochemical structures, is developed and integrated into PRIMeLink and established a walk-through link between transcriptome and metabolome information.