1H-Tetrazole as Catalyst in Phosphomorpholidate Coupling Reactions: Efficient Synthesis of GDP-Fucose, GDP-Mannose, and UDP-Galactose
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Biological roles of oligosaccharides: all of the theories are correct
Assembly of asparagine-linked oligosaccharides.
Chemical-Enzymatic Synthesis and Conformational-Analysis of Sialyl Lewis-X and Derivatives
Nucleoside Polyphosphates. XI.1 An Improved General Method for the Synthesis of Nucleotide Coenzymes. Syntheses of Uridine-5', Cytidine-5' and Guanosine-5' Diphosphate Derivatives
In situ activation of bis-dialkylaminophosphines—a new method for synthesizing deoxyoligonucleotides on polymer supports
Related Papers (5)
Nucleoside Polyphosphates. X.1 The Synthesis and Some Reactions of Nucleoside-5' Phosphoromorpholidates and Related Compounds. Improved Methods for the Preparation of Nucleoside-5' Polyphosphates1
Frequently Asked Questions (10)
Q2. What is the role of tetrazole in phosphoromorpholidate?
When used to activate phosphoramidites, tetrazole isknown to act as both an acid and nucleophilic catalyst, and tetrazolophosphane derivatives have been identified as reactive intermediates.
Q3. What is the way to test the reaction rate?
In addition, the authors subjected a mixture of GMP-morpholidate and tetrazole in pyridine to mass spectrometric analysis, using electrospray ionization in the negative mode.
Q4. What is the reaction for a glycosyl phosphate?
As the morpholino group in 2 must be protonated before acting as a leaving group and the trialkylammonium counterion of 1 (aqueous pKa ca. 10-11)34 is the only proton source present, the authors felt that the addition of an acidic catalyst might improve the outcome of the reaction.
Q5. How many mL of pyridine was added to the mixture?
4-Morpholine-N,N′-dicyclohexylcarboxamidinium guanosine 5′-monophosphomorpholidate (1.01 g, 1.28 mmol)and internal standard triphenylphosphine oxide (44.5 mg, 160 µmol) were coevaporated with dry pyridine (4 × 5 mL), dried under vacuum for 2 d, and dissolved in pyridine/DMSO-d6 (7: 3, 3.9 mL).
Q6. What was the reaction of the dipotassium phosphate?
Dipotassium R-D-mannosyl phosphate (110 mg, 311 µmol) was dissolved in H2O (1 mL) and passed through a BioRad AG 50W-X2 cation-exchange column (pyridinium form, 1.5 × 5 cm).
Q7. How long did it take to detect the GDP-Fuc?
in the case of GDP-Fuc, even after a reaction time of 5 days, the authors were able to detect large amaounts of both starting materials, as judged by TLC.
Q8. How many mL of the solution was added to the mixture?
Triethylammonium â-L-fucopyranosyl phosphate (4) (36.2 mg, 100 µmol) was coevaporated with dry pyridine (3 × 1.5 mL) and dried under vacuum for 2 d. GMPmorpholidate stock solution (500 µL) and 3.2 equiv (320 µmol) of the additive, i.e., 1H-tetrazole (22 mg), 1,2,4-triazole (22 mg), acetic acid (18 µL), NHS (37 mg), DMAP‚HCl (51 mg), or anhydrous HClO4 (19 µL), respectively, were added.
Q9. What is the effect of tetrazole on the GMPmorpholidate?
From these findings, the authors conclude that tetrazole activates GMPmorpholidate by protonation of the leaving group nitrogen and presumably by nucleophilic catalysis via the highly reactive phosphotetrazolide 10, which reacts with fucosyl phosphate 4 to GDP-Fuc (5).
Q10. What is the effect of tetrazole on the reaction rate?
On the other hand, 1,2,4-triazole (pKa 10.0), which is a stronger nucleophile in pyridine than tetrazole,43 has only little effect on the reaction rate compared with the uncatalyzed coupling.