Journal ArticleDOI
3D deeply supervised network for automated segmentation of volumetric medical images.
TLDR
The proposed 3D DSN is capable of conducting volume‐to‐volume learning and inference, which can eliminate redundant computations and alleviate the risk of over‐fitting on limited training data, and the3D deep supervision mechanism can effectively cope with the optimization problem of gradients vanishing or exploding when training a 3D deep model.About:
This article is published in Medical Image Analysis.The article was published on 2017-10-01. It has received 507 citations till now. The article focuses on the topics: Scale-space segmentation & Image segmentation.read more
Citations
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Journal ArticleDOI
UNet++: Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation
TL;DR: UNet++ as mentioned in this paper proposes an efficient ensemble of U-Nets of varying depths, which partially share an encoder and co-learn simultaneously using deep supervision, leading to a highly flexible feature fusion scheme.
Journal ArticleDOI
Deep Learning Techniques for Medical Image Segmentation: Achievements and Challenges
TL;DR: A critical appraisal of popular methods that have employed deep learning techniques for medical image segmentation is presented and the most common challenges incurred are summarized and suggest possible solutions.
Posted Content
Recurrent Residual Convolutional Neural Network based on U-Net (R2U-Net) for Medical Image Segmentation.
TL;DR: A Recurrent Convolutional Neural Network (RCNN) based on U-Net as well as a Recurrent Residual convolutional neural Network (RRCNN), which are named RU-Net and R2U-Net respectively are proposed, which show superior performance on segmentation tasks compared to equivalent models including U-nets and residual U- net.
Journal ArticleDOI
Applications of Deep Learning and Reinforcement Learning to Biological Data
TL;DR: This paper provides a comprehensive survey on the application of DL, RL, and deep RL techniques in mining biological data and compares the performances of DL techniques when applied to different data sets across various application domains.
Journal ArticleDOI
Interactive Medical Image Segmentation Using Deep Learning With Image-Specific Fine Tuning
Guotai Wang,Wenqi Li,Maria A. Zuluaga,Rosalind Pratt,Premal A. Patel,Michael Aertsen,Tom Doel,Anna L. David,Jan Deprest,Sebastien Ourselin,Tom Vercauteren +10 more
TL;DR: A novel deep learning-based interactive segmentation framework by incorporating CNNs into a bounding box and scribble-based segmentation pipeline and proposing a weighted loss function considering network and interaction-based uncertainty for the fine tuning is proposed.
References
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Book ChapterDOI
3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation
Özgün Çiçek,Ahmed Abdulkadir,Ahmed Abdulkadir,Soeren S. Lienkamp,Thomas Brox,Olaf Ronneberger,Olaf Ronneberger +6 more
TL;DR: In this paper, the authors propose a network for volumetric segmentation that learns from sparsely annotated volumetrized images, which is trained end-to-end from scratch, i.e., no pre-trained network is required.
Proceedings ArticleDOI
V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation
TL;DR: In this article, a volumetric, fully convolutional neural network (FCN) was proposed to predict segmentation for the whole volume at one time, which can deal with situations where there is a strong imbalance between the number of foreground and background voxels.
Journal ArticleDOI
Deep Convolutional Neural Networks for Computer-Aided Detection: CNN Architectures, Dataset Characteristics and Transfer Learning
Hoo-Chang Shin,Holger R. Roth,Mingchen Gao,Le Lu,Ziyue Xu,Isabella Nogues,Jianhua Yao,Daniel J. Mollura,Ronald M. Summers +8 more
TL;DR: Two specific computer-aided detection problems, namely thoraco-abdominal lymph node (LN) detection and interstitial lung disease (ILD) classification are studied, achieving the state-of-the-art performance on the mediastinal LN detection, and the first five-fold cross-validation classification results are reported.
Journal ArticleDOI
Comparing images using the Hausdorff distance
TL;DR: Efficient algorithms for computing the Hausdorff distance between all possible relative positions of a binary image and a model are presented and it is shown that the method extends naturally to the problem of comparing a portion of a model against an image.
Posted Content
Multi-Scale Context Aggregation by Dilated Convolutions
Fisher Yu,Vladlen Koltun +1 more
TL;DR: In this article, a new convolutional network module is proposed to aggregate multi-scale contextual information without losing resolution, and the architecture is based on the fact that dilated convolutions support exponential expansion of the receptive field without loss of resolution or coverage.