Complete mitochondrial genome of the Malagasy poison frog Mantella baroni through RNAseq
Yasmireilda Richard,David R. Vieites,Fanomezana M. Ratsoavina +2 more
- Vol. 5, Iss: 1, pp 1679327
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TLDR
This study reports the complete mitochondrial genome of Mantella baroni, the second mitogenome sequenced for the Mantellidae family, and hypothesizes that other Mantella species likely have large genomes, being not clear how the genome size and organization of mitochondria evolved in Malagasy frogs.Abstract:
Within the Malagasy endemic family of Mantellidae, the only completely sequenced mitochondrial genome (mitogenome) is that of Mantella madagascariensis. Yet, this genome has proven to be th...read more
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Trimmomatic: a flexible trimmer for Illumina sequence data
TL;DR: Timmomatic is developed as a more flexible and efficient preprocessing tool, which could correctly handle paired-end data and is shown to produce output that is at least competitive with, and in many cases superior to, that produced by other tools, in all scenarios tested.
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
TL;DR: An advanced version of the Molecular Evolutionary Genetics Analysis software, which currently contains facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, is released, which enables the inference of timetrees, as it implements the RelTime method for estimating divergence times for all branching points in a phylogeny.
Brief Communication MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
TL;DR: The Molecular Evolutionary Genetics Analysis (MEGA) software as discussed by the authors provides facilities for building sequence alignments, inferring phylogenetic histories, and conducting molecular evolutionary analysis, including the inference of timetrees.