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DMTCP: Transparent checkpointing for cluster computations and the desktop

TLDR
DMTCP as mentioned in this paper is a transparent user-level checkpointing package for distributed applications, which is used for the runCMS experiment of the Large Hadron Collider at CERN, and it can be incorporated and distributed as a checkpoint-restart module within some larger package.
Abstract
DMTCP (Distributed MultiThreaded CheckPointing) is a transparent user-level checkpointing package for distributed applications. Checkpointing and restart is demonstrated for a wide range of over 20 well known applications, including MATLAB, Python, TightVNC, MPICH2, OpenMPI, and runCMS. RunCMS runs as a 680 MB image in memory that includes 540 dynamic libraries, and is used for the CMS experiment of the Large Hadron Collider at CERN. DMTCP transparently checkpoints general cluster computations consisting of many nodes, processes, and threads; as well as typical desktop applications. On 128 distributed cores (32 nodes), checkpoint and restart times are typically 2 seconds, with negligible run-time overhead. Typical checkpoint times are reduced to 0.2 seconds when using forked checkpointing. Experimental results show that checkpoint time remains nearly constant as the number of nodes increases on a medium-size cluster. DMTCP automatically accounts for fork, exec, ssh, mutexes/ semaphores, TCP/IP sockets, UNIX domain sockets, pipes, ptys (pseudo-terminals), terminal modes, ownership of controlling terminals, signal handlers, open file descriptors, shared open file descriptors, I/O (including the readline library), shared memory (via mmap), parent-child process relationships, pid virtualization, and other operating system artifacts. By emphasizing an unprivileged, user-space approach, compatibility is maintained across Linux kernels from 2.6.9 through the current 2.6.28. Since DMTCP is unprivileged and does not require special kernel modules or kernel patches, DMTCP can be incorporated and distributed as a checkpoint-restart module within some larger package.

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Citations
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Designing an Analyzable and Resilient Embedded Operating System.

Philip Axer, +1 more
TL;DR: This paper presents ASTEROID, a set of hardware and operating system mechanisms that aim to provide reliable execution in such a diverse environment of multi-Processor Systems on Chip.
Journal ArticleDOI

Portable Application-level Checkpointing for Hybrid MPI-OpenMP Applications

TL;DR: This paper presents a checkpointing solution for hybrid MPI-OpenMP applications, in which checkpoint consistency is guaranteed by using a coordination protocol intra-node, while no inter-node coordination is needed.
Posted Content

Transparent Checkpoint-Restart for Hardware-Accelerated 3D Graphics

TL;DR: This work describes a mechanism for transparent GPU-independent checkpoint-restart of 3D graphics, based on a record-prune-replay paradigm, that can be implemented for OpenGL 1.5 in just 4,500 lines of code.
Journal ArticleDOI

Zeroing memory deallocator to reduce checkpoint sizes in virtualized HPC environments

TL;DR: A novel technique for checkpoint size reduction in virtualized environments is proposed exploiting the fact that the hypervisor detects zero pages which are omitted when capturing a checkpoint and applying compression techniques for a further reduction of the checkpoint size.
Proceedings Article

Independent Checkpointing in a Heterogeneous Grid Environment

TL;DR: The experimental results demonstrate the capability of the XtreemGCP service to integrate different checkpointing protocols and independently checkpoint a distributed application within a heterogeneous grid environment and the performance evaluation shows that the solution outperforms the existing coordinated checkpointing protocol in terms of scalability.
References
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Journal ArticleDOI

IPython: A System for Interactive Scientific Computing

TL;DR: The IPython project as mentioned in this paper provides an enhanced interactive environment that includes, among other features, support for data visualization and facilities for distributed and parallel computation for interactive work and a comprehensive library on top of which more sophisticated systems can be built.
Journal ArticleDOI

Distributed snapshots: determining global states of distributed systems

TL;DR: An algorithm by which a process in a distributed system determines a global state of the system during a computation, which helps to solve an important class of problems: stable property detection.

Portable implementation of the mpi message passing interface standard

TL;DR: The MPI Message Passing Interface (MPI) as discussed by the authors is a standard library for message passing that was defined by the MPI Forum, a broadly based group of parallel computer vendors, library writers, and applications specialists.
Proceedings Article

Libckpt: transparent checkpointing under Unix

TL;DR: In this paper, the authors describe a portable checkpointing tool for Unix that implements all applicable performance optimizations which are reported in the literature and also supports the incorporation of user directives into the creation of checkpoints.
Proceedings Article

Fast transparent migration for virtual machines

TL;DR: This is the first system that can migrate unmodified applications on unmodified mainstream Intel x86-based operating system, including Microsoft Windows, Linux, Novell NetWare and others, to provide fast, transparent application migration.
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