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Journal ArticleDOI

Evaluation of the OECD QSAR Application Toolbox and Toxtree for estimating the mutagenicity of chemicals. Part 1. Aromatic amines

James Devillers, +1 more
- 29 Nov 2010 - 
- Vol. 21, pp 753-769
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TLDR
The Ames Salmonella typhimurium mutagenicity assay was re-computed to check its transparency and to verify its statistical validity and about 150 chemicals not previously used for the design of the model but belonging to its domain of application were tested.
Abstract
The Ames Salmonella typhimurium mutagenicity assay is a short-term bacterial reverse mutation test that was designed to detect mutagens. For several decades, it has been used in research laboratories and by regulatory agencies throughout the world for the detection and characterization of potential mutagens among natural products and man-made chemicals. Faced with the ever-growing number of chemicals available on the market, congeneric and non-congeneric (Q)SAR models have been designed from Ames test results obtained on specific S. typhimurium strains such as TA 100 or TA 98. Such models have great potential for a quick and cheap identification and classification of large numbers of potential chemical mutagens. The OECD QSAR Application Toolbox and Toxtree, which were developed for facilitating the practical use of (Q)SAR approaches in regulatory contexts, include two mechanistic SAR models for predicting the mutagenicity of aromatic amines and - unsaturated aliphatic aldehydes. The aim of this study was to estimate the interest and limitations of the former model. The model was first re-computed to check its transparency and to verify its statistical validity. Then, it was tested on about 150 chemicals not previously used for the design of the model but belonging to its domain of application. A critical analysis of the results was performed and proposals were made for increasing the model performances.

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Citations
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QSAR Modeling is not "Push a Button and Find a Correlation": A Case Study of Toxicity of (Benzo-)triazoles on Algae.

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In Silico Prediction of Chemical Toxicity for Drug Design Using Machine Learning Methods and Structural Alerts.

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Ethics of animal research in human disease remediation, its institutional teaching; and alternatives to animal experimentation

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References
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Journal ArticleDOI

Salmonella mutagenicity test results for 250 chemicals

TL;DR: This publication is a presentation of Salmonella testing results on 250 coded chemicals, encompassing 370 tests, designed both to summarize the results in the text and to present the data so that the reader has the opportunity of performing an independent evaluation of the data.
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Aromatic amines and cancer

TL;DR: The consistent observation of a difference between men and women in bladder cancer risk, after allowing for known risk factors, suggests consideration of gender-related biological determinants for future investigation.
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Structure alerts for carcinogenicity, and the Salmonella assay system: a novel insight through the chemical relational databases technology.

TL;DR: Recent analyses on the predictive performance of various lists of structure alerts are reviewed, including a new compilation of alerts that combines previous work in an optimized form for computer implementation and the use of structural alerts for the chemical biological profiling of a large database of Salmonella mutagenicity results is reported.
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Genotoxic activity and potency of 135 compounds in the Ames reversion test and in a bacterial DNA-repair test

TL;DR: The genotoxic potencies in the two bacterial systems were correlated within the majority of the chemical classes under scrutiny, and the genot toxic potency varied over a 4.5 X 10(7)-fold range among compounds positive in the reversion test and over a 6X 10(9)-foldrange among compounds damaging E. coli DNA.

The Benigni / Bossa rulebase for mutagenicity and carcinogenicity - a module of Toxtree

TL;DR: This report gives an introduction to currently available QSARs and SAs for carcinogenicity and mutagenicity, and provides details of the Benigni/Bossa rulebase.
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