Hyper-parallel tempering Monte Carlo: Application to the Lennard-Jones fluid and the restricted primitive model
read more
Citations
Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science
Parallel tempering: Theory, applications, and new perspectives
Electrostatic correlations: from plasma to biology
Multidimensional replica-exchange method for free-energy calculations
Generalized-ensemble algorithms for molecular simulations of biopolymers.
References
New Monte Carlo technique for studying phase transitions.
Optimized Monte Carlo data analysis.
Simulated tempering: a new Monte Carlo scheme
Multicanonical ensemble: A new approach to simulate first-order phase transitions.
Multicanonical algorithms for first order phase transitions
Related Papers (5)
Frequently Asked Questions (14)
Q2. What boundary conditions were used in the calculation of the Ewald sum?
boundary conditions are applied in the calculation of the Ewald sum, while in Orkoulas and Panagiotopoulos work, vacuum boundary conditions were employed.
Q3. What is the arbitrary partition function of a grand canonical ensemble?
For the sake of generality, the authors consider an arbitrary ensemble whose partition function is given byZ5( x V~x !w~x !) j exp~ f j q j~x !!, ~1!where x denotes the state of the system, V(x) is the density of states, w(x) is an arbitrary weighting function for state x, f j’s are generalized forces or potentials, and the q j’s are the corresponding conjugate generalized coordinates of the system.
Q4. How many configurations are needed to obtain the coexistence curve?
Orkoulas and Panagiotopoulos report that, to obtain results of comparable accuracy using a grand canonical method, about 109 configurations are necessary.
Q5. What is the way to calculate phase diagrams?
Unless the degree of overlap between histograms is sufficiently large, multihistogram reweighting techniques are not useful for calculating phase diagrams.
Q6. How does the HPTMC method give rise to a reasonable acceptance rate for swap trials?
By construction, if two histograms overlap sufficiently, the HPTMC method gives rise to a reasonable acceptance rate for swap trial moves.
Q7. What is the source of the discrepancy?
The source of the discrepancy could also be that the simulation method employed here is more efficient than that of Orkoulas and Panagiotopoulos, and it therefore, permits simulations of larger systems with a smaller degree of correlation between successive configurations; their resultsDownloaded 08 Mar 2007 to 128.104.198.190.
Q8. What is the reduced density of the Lennard-Jones fluid?
For the restricted primitive model, the reduced temperature is defined as T*54pDD0skBT/e2, and the reduced density is given by r*52Ns3/V .
Q9. How many replicas are to be swapped?
To enforce a detailed-balance condition, the pair of replicas to be swapped is selected at random, and the trial swap is accepted with probability:pacc~xi↔xi11!5minF1,wi~xi11!
Q10. How much more efficient is the hyper-parallel tempering method?
From an energy autocorrelation point of view, hyper-parallel tempering is about one order of magnitude more efficient than the conventional method.
Q11. What is the chemical potential for the restricted primitive model?
Note that for the restricted primitive model, N is the number of particle pairs ~the chemical potential is defined as the total chemical potential per ion pair!.
Q12. what is the probability distribution for a grand canonical ensemble?
5H~N ,U !/K . ~11!The probability distribution for a grand canonical ensemble is given byP~N ,U ,T ,m!5 V~N ,V ,U !exp~2bU1Nbm!J~m ,V ,T ! , ~12!where V(N ,V ,U) is the microcanonical partition function ~density of states at N and U), and J is the grand partition function, given byJ~m ,V ,T !5( N ( U V~N ,V ,U !exp~2bU1Nbm!.~13!Combination of Eqs. ~11! and ~12! provides a Monte Carlo estimate of V(N ,V ,U), given byV~N ,V ,U !5wH~N ,U !exp~b0U2Nb0m0!, ~14!Downloaded 08 Mar 2007 to 128.104.198.190. Redistribution subjectwhere w5J(m ,V ,T)/K is a proportionality constant.
Q13. What is the way to measure the efficiency of the new method?
however, that for simulations of phase transitions, a more appropriate measure of efficiency is provided by the ‘‘tunneling time,’’ i.e., the time required to observe a jump from a vapor-like phase to a liquidlike phase during a simulation.
Q14. How are the critical points of an Ising-class fluid tuned?
To estimate the critical point of an Ising-class fluid, the temperature, chemical potential and the mixing parameters are tuned so that the re-Downloaded 08 Mar 2007 to 128.104.198.190.