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Physical and chemical considerations of damage induced in protein crystals by synchrotron radiation: a radiation chemical perspective.

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TLDR
A radiation chemical perspective on some of the physical and chemical processes that need to be considered in understanding potential pathways leading to the gradual degradation of protein samples by synchrotron radiation.
Abstract
Radiation-induced degradation of protein or DNA samples by synchrotron radiation is an inherent problem in X-ray crystallography, especially at the `brighter' light sources. This short review gives a radiation chemical perspective on some of the physical and chemical processes that need to be considered in understanding potential pathways leading to the gradual degradation of the samples. Under the conditions used for X-ray crystallography at a temperature of <100 K in the presence of cryoprotectant agents, the majority of radiation damage of the protein samples arises from direct ionization of the amino acid residues and their associated water molecules. Some of the chemical processes that may occur at these protein centres, such as bond scission, are discussed. Several approaches are discussed that may reduce radiation damage, using agents known from radiation chemistry to minimize radical-induced degradation of the sample.

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Citations
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X-ray damage to the Mn4Ca complex in single crystals of photosystem II: A case study for metalloprotein crystallography

TL;DR: This case study shows that a careful evaluation of the structural intactness of the active site(s) by spectroscopic techniques can validate structures derived from crystallography and that it can be a valuable complementary method before structure-function correlations of metalloproteins can be made on the basis of high-resolution x-ray crystal structures.
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Radiation damage in macromolecular crystallography: what is it and why should we care?

TL;DR: The basic causes of the radiation damage inflicted on macromolecular crystals during diffraction experiments are summarized, as well as the current state of research which attempts to understand and to mitigate it.
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A beginner’s guide to radiation damage

TL;DR: Radiation damage considerations affecting data collection by more than a factor of two are summarized and damage avoidance strategies are suggested.
Journal ArticleDOI

Radiation damage in macromolecular cryocrystallography.

TL;DR: With an increased knowledge of expected crystal lifetime, beamline characteristics and types of damage, macromolecular crystallographers might soon be able to account for radiation damage in data collection, processing and phasing.
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Ultrahigh Resolution Structure of a Class A β-Lactamase: On the Mechanism and Specificity of the Extended-spectrum SHV-2 Enzyme

TL;DR: Findings support a role for the Glu166-water couple, rather than Lys73, as the general base in the deprotonation of Ser70 in the acylation process of class A beta-lactamases, making less likely its hydrogen bonding to oximino cephalosporins such as cefotaxime or ceftazidime.
References
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Journal ArticleDOI

Reduction Potentials of One-Electron Couples Involving Free Radicals in Aqueous Solution

TL;DR: In this paper, the reduction potentials of one-electron couples are used to predict the direction or feasibility of many free-radical reactions in aqueous solutions, including those involving phenols, aromatic amines, indoles, pyrimidines, thiols and phenothiazines.
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Reaction mechanisms in the radiolysis of peptides, polypeptides, and proteins

TL;DR: The purpose of this review is to bring together and to correlate the wide variety of experimental studies that provide information on the reaction products and reaction mechanisms involved in the radiolysis of peptides, polypeptides and proteins in both aqueous and solid-state systems.
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Estimation of life times and diffusion distances of radicals involved in x- ray-induced DNA strand breaks of killing of mammalian cells

TL;DR: The data support the idea that OH is the radical species primarily responsible for the indirect effect in radiation injury measured as DNA single-strand breaks or cell killing, and that H and e$sup -$/sub aq/ are not significantly involved.
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Electron Spin Resonance Study of Electron Transfer Rates in DNA: Determination of the Tunneling Constant β for Single-Step Excess Electron Transfer

TL;DR: In this article, an investigation of electron transfer in DNA at low temperatures in an aqueous glassy medium is reported for a system in which electrons are generated by radiation and trapped on DNA.
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