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Journal ArticleDOI

Selective bond breaking mediated by state specific vibrational excitation in model HOD molecule through optimized femtosecond IR pulse: A simulated annealing based approach

TLDR
The selective control of O-H/O-D bond dissociation in reduced dimensionality model of HOD molecule has been explored through IR+UV femtosecond pulses and selectivity of the bond breaking by UV pulse (if required, optimized) together with optimized IR one is encouraging compared to the normal pulses.
Abstract
The selective control of O–H/O–D bond dissociation in reduced dimensionality model of HOD molecule has been explored through IR+UV femtosecond pulses. The IR pulse has been optimized using simulated annealing stochastic approach to maximize population of a desired low quanta vibrational state. Since those vibrational wavefunctions of the ground electronic states are preferentially localized either along the O–H or O–D mode, the femtosecond UV pulse is used only to transfer vibrationally excited molecule to the repulsive upper surface to cleave specific bond, O–H or O–D. While transferring from the ground electronic state to the repulsive one, the optimization of the UV pulse is not necessarily required except specific case. The results so obtained are analyzed with respect to time integrated flux along with contours of time evolution of probability density on excited potential energy surface. After preferential excitation from |0, 0⟩ (|m, n⟩ stands for the state having m and n quanta of excitations in O–H and O–D mode, respectively) vibrational level of the ground electronic state to its specific low quanta vibrational state (|1, 0⟩ or |0, 1⟩ or |2, 0⟩ or |0, 2⟩) by using optimized IR pulse, the dissociation of O–D or O–H bond through the excited potential energy surface by UV laser pulse appears quite high namely, 88% (O–H ; |1, 0⟩) or 58% (O–D ; |0, 1⟩) or 85% (O–H ; |2, 0⟩) or 59% (O–D ; |0, 2⟩). Such selectivity of the bond breaking by UV pulse (if required, optimized) together with optimized IR one is encouraging compared to the normal pulses.

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Citations
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Journal ArticleDOI

Structural and spectroscopic studies of iodine dimer radical anion hydrated clusters: an approach using a combination of stochastic and quantum chemical methods

TL;DR: In this article, the authors explore the idea of obtaining structures and IR spectral features of I2−(H2O)n cluster with n = 2 to 6, and show that the initial pre-optimization can indeed pave the way for quick and better convergence on subsequent quantum chemical refinement.
Journal ArticleDOI

An adaptive mutation simulated annealing based investigation of Coulombic explosion and identification of dissociation patterns in (CO2)n2+ clusters.

TL;DR: It is demonstrated how AMSA itself can overcome the predicaments which can arise in conventional SA and carry out the search for better results by adapting the parameters dynamically during the simulations so that the search process can come out of high energy basins and not go astray for better exploration and convergence, respectively.
Journal ArticleDOI

Protein folding: understanding the role of water and the low Reynolds number environment as the peptide chain emerges from the ribosome and folds.

TL;DR: With very few exceptions that are enumerated and discussed, tertiary structures are absent from proteins without hydrophobic amino acids, which control the early stages of protein folding and the overall shape of protein, Consequently, proteins only adopt a limited number of forms.
Journal ArticleDOI

An investigation on the structure, spectroscopy and thermodynamic aspects of Br2(−)(H2O)n clusters using a conjunction of stochastic and quantum chemical methods

TL;DR: In this work, excellent quality pre-optimized structures are generated by exploring the suitable empirical potential energy surface using stochastic optimizer simulated annealing and then further refined using quantum chemical calculations to obtain the final structures, and spectral and thermodynamic features.
Journal ArticleDOI

Mapping out reaction paths for conformational changes in ( M g O ) n clusters: a study based on a stochastic procedure

TL;DR: In this article, the authors addressed the problem of finding transformation pathways or reaction paths for interconversion among isomers in (M g g O) n clusters, where n denotes the size.
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