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Open AccessJournal ArticleDOI

Single-crystal structure validation with the program PLATON

Anthony L. Spek
- 01 Feb 2003 - 
- Vol. 36, Iss: 1, pp 7-13
TLDR
The results of a single-crystal structure determination when in CIF format can now be validated routinely by automatic procedures, and the concepts of validation and the classes of checks carried out by the program PLATON as part of the IUCr checkCIF facility are described.
Abstract
The results of a single-crystal structure determination when in CIF format can now be validated routinely by automatic procedures. In this way, many errors in published papers can be avoided. The validation software generates a set of ALERTS detailing issues to be addressed by the experimenter, author, referee and publication journal. Validation was pioneered by the IUCr journal Acta Crystallographica Section C and is currently standard procedure for structures submitted for publication in all IUCr journals. The implementation of validation procedures by other journals is in progress. This paper describes the concepts of validation and the classes of checks that are carried out by the program PLATON as part of the IUCr checkCIF facility. PLATON validation can be run at any stage of the structure refinement, independent of the structure determination package used, and is recommended for use as a routine tool during or at least at the completion of every structure determination. Two examples are discussed where proper validation procedures could have avoided the publication of incorrect structures that had serious consequences for the chemistry involved.

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Citations
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J. Appl. Cryst.の発刊に際して

良二 上田
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Semiconducting tin and lead iodide perovskites with organic cations: phase transitions, high mobilities, and near-infrared photoluminescent properties.

TL;DR: It is found that the chemical and physical properties of these materials strongly depend on the preparation method, and the properties of the title hybrid materials with those of the "all-inorganic" CsSnI3 and CsPbI3 prepared using identical synthetic methods.
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PLATON SQUEEZE: a tool for the calculation of the disordered solvent contribution to the calculated structure factors

TL;DR: The SQUEEZE method is documents as an alternative means of addressing the solvent disorder issue and conveniently interfaces with the 2014 version of the least-squares refinement program SHELXL, and many twinned structures containing disordered solvents are now also treatable by SQUEEze.
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Effects of functionalization, catenation, and variation of the metal oxide and organic linking units on the low-pressure hydrogen adsorption properties of metal-organic frameworks.

TL;DR: The results suggest that under low-loading conditions, the H(2) adsorption behavior of MOFs can be improved by imparting larger charge gradients on the metal oxide units and adjusting the link metrics to constrict the pore dimensions; however, a large pore volume is still a prerequisite feature.
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Use of intensity quotients and differences in absolute structure refinement

TL;DR: Differences and quotients can be defined using Friedel pairs of reflections and applied in refinement to enable absolute structure to be determined precisely even for light atom crystal structures.
References
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Journal ArticleDOI

J. Appl. Cryst.の発刊に際して

良二 上田
Journal ArticleDOI

BYPASS: an effective method for the refinement of crystal structures containing disordered solvent regions

TL;DR: In this article, a method for least squares refinement of the atomic parameters of the ordered part of a crystal structure in the presence of disordered solvent areas is described, and the contribution of the observed contents to the total structure factor is calculated via a discrete Fourier transformation.
Journal ArticleDOI

Reporting and evaluating absolute-structure and absolute-configuration determinations

TL;DR: In this article, practical and numerical information for undertaking and evaluating absolute structure and configuration determinations is provided for macromolecular structures, the dangers of polar-dispersion errors, Euclidean normalizers of space groups, detection and reporting of molecular symmetry, enantiopurity and optical activity in solution.
Journal ArticleDOI

Absolute structure and absolute configuration.

TL;DR: Important experimental and algorithmic details of the current methods used for absolute-structure determination are provided and attention is given to the analysis of absolute structure and absolute configuration in twinned crystals.
Journal ArticleDOI

Can X‐ray data distinguish bonding effects from vibrational smearing?

TL;DR: In this article, the success of this separation can be tested by comparison of the vibration ellipsoids of bonded atom pairs, which should have equal amplitudes in the bond direction.
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