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Open AccessJournal ArticleDOI

The neutral theory of molecular evolution.

Thomas H. Jukes
- 01 Mar 2000 - 
- Vol. 154, Iss: 3, pp 956-958
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TLDR
It is stated that these sequences differed in the cytochromes c of various species to an extent that seemed unnecessary from the standpoint of their function.
Abstract
IN 1966, I became interested in the amino acid sequences of cytochrome c molecules ([Jukes 1966][1]). I noted that these sequences differed in the cytochromes c of various species to an extent that seemed unnecessary from the standpoint of their function. I stated, “The changes produced in

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Citations
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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA.

TL;DR: A new statistical method for estimating divergence dates of species from DNA sequence data by a molecular clock approach is developed, and this dating may pose a problem for the widely believed hypothesis that the bipedal creatureAustralopithecus afarensis, which lived some 3.7 million years ago, was ancestral to man and evolved after the human-ape splitting.
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MUSCLE: a multiple sequence alignment method with reduced time and space complexity

TL;DR: MUSCLE offers a range of options that provide improved speed and / or alignment accuracy compared with currently available programs, and a new option, MUSCLE-fast, designed for high-throughput applications.
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A general framework for estimating the relative pathogenicity of human genetic variants

TL;DR: The ability of CADD to prioritize functional, deleterious and pathogenic variants across many functional categories, effect sizes and genetic architectures is unmatched by any current single-annotation method.
Journal Article

Preservation of duplicate genes by complementary, degenerative mutations.

TL;DR: Cooke et al. as mentioned in this paper proposed a new conceptual framework for understanding the evolution of duplicate genes that may help explain this conundrum, focusing on the regulatory complexity of eukaryotic genes, and showed how complementary degenerative mutations in different regulatory elements of duplicated genes can facilitate the preservation of both duplicates, thereby increasing long-term opportunities for the development of new gene functions.
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Adaptive versus non‐adaptive phenotypic plasticity and the potential for contemporary adaptation in new environments

TL;DR: It is concluded that adaptive plasticity that places populations close enough to a new phenotypic optimum for directional selection to act is the only Plasticity that predictably enhances fitness and is most likely to facilitate adaptive evolution on ecological time-scales in new environments.
References
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Journal ArticleDOI

Evolutionary Rate at the Molecular Level

TL;DR: Calculating the rate of evolution in terms of nucleotide substitutions seems to give a value so high that many of the mutations involved must be neutral ones.
Journal ArticleDOI

Non-Darwinian Evolution

Jack Lester King, +1 more
- 16 May 1969 - 
TL;DR: NonDarwinian evolution of protein and DNA, comparing expectations of evolution models for protein and amino acid changes is compared.
Journal ArticleDOI

The nearly neutral theory of molecular evolution

TL;DR: The neutral mutation-random drift hypothesis put forward by Kimura (47) in 1968 provoked much controversy because this theory was contrary to the neo-Darwinian view at that time, and a complete review of the theory is found.
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Slightly deleterious mutant substitutions in evolution.

TL;DR: If this class of mutant substitution is important, it can be predicted that the evolution is rapid in small populations or at the time of speciation5.
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