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Topological analysis of the electron density in hydrogen bonds.

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TLDR
A new classification of hydrogen bonds using the positive curvature of the electron density at the critical point [lambda(3)(r(CP))] is proposed.
Abstract
Topological analysis of the experimental electron density ρ(r) in hydrogen-bonding regions has been carried out for a large number of organic compounds using different multipole models and techniques. Relevant systematic relationships between topological properties at the critical points and the usual geometric parameters are pointed out. Results involving X-ray data only and joint X-ray and neutron data, as well as special hydrogen bonding cases (symmetric, bifurcated, peptide bonds, etc.) are included and analysed in the same framework. A new classification of hydrogen bonds using the positive curvature of the electron density at the critical point [\lambda_3({\bf r}_{\rm CP})] is proposed.

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Citations
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Journal ArticleDOI

NCIPLOT: A Program for Plotting Noncovalent Interaction Regions

TL;DR: The NCI computational algorithms and their implementation for the analysis and visualization of weak interactions, using both self-consistent fully quantum-mechanical, as well as promolecular, densities are described.
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From weak to strong interactions: A comprehensive analysis of the topological and energetic properties of the electron density distribution involving X–H⋯F–Y systems

TL;DR: In this paper, the topological and energetic properties of the electron density distribution ρ(r) of isolated pairwise H⋯F interaction have been theoretically calculated at several geometries and represented against the corresponding internuclear distances.
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Behavior of Ylides Containing N, O, and C Atoms as Hydrogen Bond Acceptors

TL;DR: In this paper, the formation of low-barrier hydrogen bonds between ylides and different neutral molecules was studied, and the analysis of the protonation energies and the optimized geometries, interaction energies, and characteristics of the electron density of the complexes showed that these ylsides are very good HB acceptors, forming stable complexes even with weak HB donors.
Journal ArticleDOI

Chemical bonding in crystals: new directions

TL;DR: In this article, the authors discuss the relationship between the particle localization function (ELF) and the Laplacian of the electron density, and the use of approximated ELF and LOL, as derived from the density functional form of the positive kinetic energy density.
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Bond paths are not chemical bonds.

TL;DR: This account takes to task papers that criticize the definition of a bond path as a criterion for the bonding between the atoms it links by mistakenly identifying it with a chemical bond, and shows that one may define a Bond path operator as a Dirac observable, making the bond path the measurable expectation value of a quantum mechanical operator.
References
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Book

Atoms in molecules : a quantum theory

TL;DR: In this article, the quantum atom and the topology of the charge desnity of a quantum atom are discussed, as well as the mechanics of an atom in a molecule.
Journal ArticleDOI

Hydrogen bond strengths revealed by topological analyses of experimentally observed electron densities

TL;DR: In this article, the topological properties of ρ(r) at the intermolecular critical points of 83 experimentally observed hydrogen bonds [X-H⋯O (X=C,N,O)], using accurate X-ray diffraction experiments, were analyzed.
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Testing aspherical atom refinements on small-molecule data sets

TL;DR: In this paper, a generalized aspherical-atom formalism is used to refine X-ray data on silicon, tetracyanoethylene, p-nitropyridine N-oxide and ammonium thiocyanate.
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Crystal field effects on the topological properties of the electron density in molecular crystals: The case of urea

TL;DR: In this paper, the Quantum Theory of Atoms in Molecules, due to Bader, is applied to periodic systems and changes in both bond critical points and atomic properties due to changes of chemical environment are described.
Journal ArticleDOI

Can X‐ray data distinguish bonding effects from vibrational smearing?

TL;DR: In this article, the success of this separation can be tested by comparison of the vibration ellipsoids of bonded atom pairs, which should have equal amplitudes in the bond direction.
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