Showing papers on "Gadus published in 2023"

Detecting parallel polygenic adaptation to novel evolutionary pressure in wild populations: a case study in Atlantic cod (Gadus morhua)

Abstract: Populations can adapt to novel selection pressures through dramatic frequency changes in a few genes of large effect or subtle shifts in many genes of small effect. The latter (polygenic adaptation) is expected to be the primary mode of evolution for many life-history traits but tends to be more difficult to detect than changes in genes of large effect. Atlantic cod (Gadus morhua) were subjected to intense fishing pressure over the twentieth century, leading to abundance crashes and a phenotypic shift toward earlier maturation across many populations. Here, we use spatially replicated temporal genomic data to test for a shared polygenic adaptive response to fishing using methods previously applied to evolve-and-resequence experiments. Cod populations on either side of the Atlantic show covariance in allele frequency change across the genome that are characteristic of recent polygenic adaptation. Using simulations, we demonstrate that the degree of covariance in allele frequency change observed in cod is unlikely to be explained by neutral processes or background selection. As human pressures on wild populations continue to increase, understanding and attributing modes of adaptation using methods similar to those demonstrated here will be important in identifying the capacity for adaptive responses and evolutionary rescue. This article is part of the theme issue ‘Detecting and attributing the causes of biodiversity change: needs, gaps and solutions’.

Behavioural responses of wild, spawning Atlantic cod (Gadus morhua L.) to seismic airgun exposure

Abstract: Seismic airgun surveys to map petroleum deposits in the seabed may impact behaviour of marine animals over large distances. Understanding whether fish spawning behaviour is affected by this anthropogenic noise source is important because reproductive success may be impacted. The fine-scale behavioural responses of Atlantic cod to airgun exposure over an extended period were investigated using an acoustic telemetry positioning system on a spawning ground in Norway. During 2019 to 2021, 135 spawning cod were equipped with telemetry sensor tags and were exposed to airgun shooting during the spawning periods of 2020 and 2021, with varying received sound levels comparable to a full-scale survey at distances of 5 to >40 km. Cod demonstrated only weak responses to the disturbance from repeated 3-h treatment periods over 5-d, swimming on average slightly deeper during seismic exposure compared to silent control periods. This response varied between individuals. Longer-term effects of seismic exposure on swimming depth were not detected. No changes in swimming acceleration, displacement, or area use occurred. These results suggest that relatively distant seismic surveys do not substantially alter cod behaviour during the spawning period at received sound exposure levels varying between 115 and 145 dB re 1 µPa2s over a 5-d period.

Identification of umami peptides based on virtual screening and molecular docking from Atlantic cod (Gadus morhua).

Abstract: Umami peptides have currently become the research focus in the food umami science field and the key direction for umami agent development. This is because umami peptides have good processing characteristics, umami and nutritional values. We here used virtual screening (including online enzymolysis through ExPASy PeptideCutter, bioactivity screening using the PeptideRanker, toxicity and physicochemical property prediction using Innovagen and ToxinPred software), molecular docking, and electronic tongue analysis to identify umami peptides generated from Atlantic cod myosin. Twenty-three putative umami peptides were screened from the myosin. Molecular docking results suggested that these 23 peptides could enter the binding pocket in the T1R3 cavity, wherein Glu128 and Asp196 were the main amino acid residues, and that hydrogen bonding and electrostatic interactions were the main binding forces. Twelve synthetic peptides tested on the electronic tongue exhibited umami taste and a synergistic effect with monosodium glutamate (MSG). Among them, GGR, AGCD, and SGDAW had higher umami intensities than the other peptides, while SGDAW and NDDGW exhibited stronger umami-enhancing capabilities in 0.1% MSG solution. This study offers a method for the rapid screening of umami peptides from marine protein resources and places the foundation for their application in the food industry.

Comparing Atlantic Cod Temporal Spawning Dynamics across a Biogeographic Boundary: Insights from Passive Acoustic Monitoring

Abstract: Atlantic Cod Gadus morhua, which are overfished in the United States, are potentially vulnerable to disturbance from offshore wind energy (OWE) construction and operation during their spawning period. While many aspects of Atlantic Cod biology are well studied, little is known of their habitat use and spawning behavior at the extreme southern extent of the species' range. As Atlantic Cod form dense spawning aggregations and produce sounds associated with courtship behaviors, we used a combination of fixed-station and glider-based passive acoustic monitoring methods to evaluate the spatiotemporal spawning dynamics of Atlantic Cod in the Georges Bank stock. Additionally, we assessed potential interactions with OWE in designated offshore wind lease areas within southern New England waters of the western North Atlantic Ocean. Generalized linear modeling was used to evaluate correlations between cod grunt activity and multiple environmental cycles. Results from the southern New England spawning grounds were compared to similar data describing the geographically separated Massachusetts Bay winter-spawning subpopulation within the western Gulf of Maine stock. Temporal patterns in Atlantic Cod grunts suggest that spawning in southern New England waters is concentrated in November and December and is greatest near the new and full moons. Although there were fine-scale differences in the temporal dynamics of grunt presence between the two regions, the overall seasonality of inferred spawning was similar. Results suggest that Atlantic Cod spawning in southern New England overlaps with planned OWE construction in time and space. An understanding of cod spawning phenology in the western North Atlantic can be used to minimize disturbance to spawning through limiting construction timelines and consideration of turbine or cable placement.

Half a century of high-latitude fisheries oceanography research on the “recruitment problem” in Northeast Arctic cod (Gadus morhua)

Abstract: Predicting recruitment in a reliable fashion is a great challenge within operational fisheries advice. Here, we consulted the unique but undercommunicated IMR Cod Larva Project (1975–1990), its spin-offs, placed in an international era of advancements over the last 50 years to glance into the future. Few initiatives of this kind have applied such extensive research approaches, spanning from laboratory, mesocosm, tank, and field studies to process modelling. The “critical period” concept appeared misleading, covering months rather than days of the early life history stages (ELHS) of Northeast Arctic cod. Larval feeding success was strongly modified by improved encounter rates from wind-induced turbulence. In addition, the following maternal effect studies evidenced that the dynamics of stock demography prior to spawning should be upheld to promote recruitment success. Although we now have lower-trophic level models as well as ELHS individual-based models, such models are still insufficiently reflecting the needed spatiotemporal resolution. The same problem applies to climate/circulation models. Nevertheless, this long-lasting research has significantly improved the mechanistic understanding of ELHS dynamics but also of the more predictable adult reproductive parameters. Based on a “to-list list,” we suggest research avenues that should be pursued to further improve our ability predicting recruitment strength in marine fish stocks.

Feeding strategy and prey selectivity in common minke whales (Balaenoptera acutorostrata) foraging in the southern Barents Sea during early summer

Abstract: Stomach content samples from 33 minke whales (Balaenoptera acutorostrata), caught during Norwegian commercial whaling between May-June 1998, were collected in four sub-areas in the southern Barents Sea. Simultaneously, a comprehensive resource survey was conducted in order to identify and estimate the abundance of potential prey items for the whales in the four sub-areas. Krill (Thysanoessa sp. and Meganyctphanes norvegica) dominated the diet in all but one sub-area although pelagic fish such as capelin and herring also contributed significantly. The minke whales displayed monophagus feeding in all sub-areas investigated, including the medium-scale area resulting from pooling of all sub-areas. The small-scale resource surveys revealed significant variations in absolute and relative prey abundance between sub-areas, while the temporal (1-7 days) variations in relative prey biomass within sub-areas appeared to be less significant for all prey items, except herring (Clupea harengus) and perhaps capelin (Mallotus villosus). Krill was by far the most important prey item available in all areas, followed by either herring, cod (Gadus morhua) or saithe (Pollachius virens), depending on sub-area and survey. Although minke whale prey preference appeared to vary greatly in space, some new features of minke whale foraging behaviour were evident. Minke whales showed a strong preference for capelin, whereas gadoids (cod, haddock (Melanogrammus aeglefinus) and saithe) appeared to be avoided by the whales. Krill appeared to have been either avoided, fed upon randomly or were the preferred prey depending on sub-area and analyses level.

Potential of Atlantic Codfish (Gadus morhua) Skin Collagen for Skincare Biomaterials

Abstract: Collagen is the major structural protein in extracellular matrix present in connective tissues, including skin, being considered a promising material for skin regeneration. Marine organisms have been attracting interest amongst the industry as an alternative collagen source. In the present work, Atlantic codfish skin collagen was analyzed, to evaluate its potential for skincare. The collagen was extracted from two different skin batches (food industry by-product) using acetic acid (ASColl), confirming the method reproducibility since no significant yield differences were observed. The extracts characterization confirmed a profile compatible with type I collagen, without significant differences between batches or with bovine skin collagen (a reference material in biomedicine). Thermal analyses suggested ASColl’s native structure loss at 25 °C, and an inferior thermal stability to bovine skin collagen. No cytotoxicity was found for ASColl up to 10 mg/mL in keratinocytes (HaCaT cells). ASColl was used to develop membranes, which revealed smooth surfaces without significative morphological or biodegradability differences between batches. Their water absorption capacity and water contact angle indicated a hydrophilic feature. The metabolic activity and proliferation of HaCaT were improved by the membranes. Hence, ASColl membranes exhibited attractive characteristics to be applied in the biomedical and cosmeceutical field envisaging skincare.

Upgrading Marine Oils from Cod (Gadus morhua) On-Board the Deep-Sea Vessels—From Waste to Value

Abstract: Significant amounts of marine raw material are lost on-board the deep-sea vessels due to fast quality degradation. Optimal on-board handling and processing strategies can upgrade these resources from waste to food ingredients rich in nutrients such as omega-3 fatty acids. The objective of this study was to investigate the effect of raw material freshness and sorting on the quality, composition and yield of oil produced thermally from cod (Gadus morhua) residuals on-board a commercial trawler. Oil was produced from whole viscera fractions with liver or out-sorted livers right after a catch and after chilled storage for up to 6 days. The results showed that significantly higher oil yields could be obtained if the raw materials were stored for 1 day or longer. However, an undesired emulsion was formed when viscera were stored for 4 days. All oils were rich in health beneficial omega-3 fatty acids, but viscera oils had generally lower quality with higher levels of free fatty acids and oxidation products. However, out-sorting of the liver was not necessary to meet guidelines for high-quality fish oil. Both viscera and liver could be stored for up to 2 days at 4 °C prior to oil production and still meet quality criteria for food applications. These results demonstrate a large potential in upgrading currently wasted marine raw materials into high-quality food ingredients.

Atlantic cod (Gadus morhua) larvae are attracted by low-frequency noise simulating that of operating offshore wind farms

Abstract: The number and size of offshore wind (OW) turbines is increasing rapidly. OW turbines produce continuous, low-frequency noise that could impact marine fish dispersing/migrating through the facilities. Any such impact would be relevant for larval stages, which have limited possibility to swim away from OW facilities. If directional movement of fish larvae at sea is impacted by low-frequency continuous sound is unknown. We observe the behavior of Atlantic cod larvae (N = 89) in response to low-frequency sound while they are drifting in a Norwegian fjord inside transparent drifting chambers. We transmit 100 Hz continuous sound in the fjord, in the intensity range of OW turbines' operational noise, and measure the sound pressure and 3-D particle motion. Half of the larvae (N = 45) are exposed to low-frequency (100 Hz) continuous sound, while the other half (N = 44) are observed under the same conditions but without the sound. Exposure does not affect the routine and maximum swimming speeds or the turning behavior of the larvae. Control larvae orient to the northwest. In contrast, exposed larvae orient towards the source of low-frequency sound and particle motion. This provides a basis to assess how OW might impact dispersal in this species.

Atlantic cod (Gadus morhua) assessment approaches in the North and Baltic Sea: A comparison of environmental DNA analysis versus bottom trawl sampling

Abstract: The assessment of fish stocks is often dependent on scientific trawl fisheries surveys, which are both invasive and costly. The analysis of environmental DNA (eDNA) from water samples is regarded as a non-invasive and cost-effective alternative, but meaningful performance evaluations are required for a wider application. The goal of this study was to comparatively analyze a newly developed, more sensitive real-time PCR based eDNA approach with bottom trawl fisheries catches to locally detect and quantify Atlantic cod (Gadus morhua) in the North and Baltic Seas. With a species-specificity of the qPCR assay of 100%, a minimal limit of 15 Cytochrome b eDNA copies was determined for the detection of cod. In addition, a Gaussian processing regression proved a significant correlation (95%) between eDNA (copies per L of water) and cod biomass (CPUE/Ha) found by bottom trawling. The results presented here prove the potential of eDNA analyses for quantitative assessments of commercial fish stocks in the open ocean, although additional comparative analyses are needed to demonstrate its performance under different oceanographic conditions.

Latitudinally distinct stocks of Atlantic cod face fundamentally different biophysical challenges under on‐going climate change

Abstract: The reproductive success of marine ectotherms is especially vulnerable in warming oceans due to alterations in adult physiology, as well as embryonic and larval survival prospects. These vital responses may, however, differ considerably across the species' geographical distribution. Here we investigated the life history, focusing on reproductive ecology, of three spatially distant populations (stocks) of Atlantic cod (Gadus morhua, Gadidae) (50–80° N), in the Irish/Celtic Seas-English Channel Complex, North and Barents Seas, under past and projected climate. First, experimental tracking of spawning behaviour evidenced that the ovulation cycle is highly distressed at ≥9.6 (±0.25)°C (Tup). This knife-edge threshold resulted in erratic spawning frequencies, whereas vitellogenin sequestration remained unaffected, indicating endocrine rather than aerobic scope constraints. Cod in the Celtic Sea-English Channel are, therefore, expected to show critical stock depensation over the next decades as spawning grounds warm above Tup, with Irish Sea cod subsequently at risk. Second, in the relatively cooler North Sea, the northward retraction of Calanus finmarchicus (Calanidae) and Para-Pseudocalanus spp. (Clausocalanidae) (1958–2017) limit cod larvae feeding opportunities, particularly in the southernmost subarea. However, the contrasting increase in Calanus helgolandicus (Calanidae) does not counteract this negative effect, likely because cod larvae hatch ahead of its abundance peaks. Overfishing again comes as a twin effect. Third, in the still relatively cold Barents Sea, the sustainably harvested cod benefit from improved food conditions in the recent ice-free polar region but at the energetic cost of lengthier and faster spawning migrations. Consequently, under climate change local stocks are stressed by different mechanistic factors of varying management severity.

Escape panels in trawls: does placement matter when every individual contacting the panel can escape?

Abstract: Escape panels are one of the bycatch reduction devices most used in trawl fisheries but their efficiency rely on fish actively contacting the panel to escape. The probability of contact can be length-independent, increase or decrease at length, and vary depending on panel placement. We conducted fishing trials with a large mesh panel placed in the upper panel of the trawl at 3, 4 and 7 m from the codline. Different hypothetical scenarios of contact probability were tested and revealed that the placement of a panel affects significantly its efficiency due to a change in type of contact. Cod (Gadus morhua) showed a contact increasing with length when the panel was closest to the codline, while contact probability decreased with length at the other placements. Similarly, contact probability for plaice (Pleuronectes platessa) was found to increase with length at 3 and 4 m, whereas a length-independent contact best represented the data at 7 m. Finally, Nephrops (Nephrops norvegicus) had in general low contact probability. The results provide new knowledge regarding species and placement-dependent panel escape.

Evaluating drivers of spatiotemporal variability in individual condition of a bottom-associated marine fish, Atlantic cod (Gadus morhua)

Abstract: An organism’s body condition describes its mass given its length and is often positively associated with fitness. The condition of Atlantic cod (Gadus morhua) in the Baltic Sea has declined dramatically since the early 1990s, possibly due to increased competition for food and hypoxia. However, the effects of biotic and abiotic variables on body condition have not been evaluated at local scales, which is important given spatial heterogeneity. We evaluate changes in distribution, experienced environmental conditions, and individual-level condition of cod in relation to covariates at different spatial scales using geostatistical models with spatial and spatiotemporal random effects. Sprat, Saduria entomon, temperature and oxygen were positively associated with condition, and depth was negatively associated. However, the effects of explanatory variables were small—spatial and spatiotemporal latent variables explained 5.7 times more variation than all covariates together (year excluded). Weighting environmental oxygen with local biomass densities revealed steeper declining trends compared to the unweighted oxygen in the environment, while the effect of weighting was less clear for condition. Understanding the drivers of spatiotemporal variation in body condition is critical for predicting responses to environmental change and to effective fishery management; yet low explanatory power of covariates on individual condition constitutes a major challenge.

Diets of gadoid fish in Arctic waters of Svalbard fjords during the polar night

Abstract: Abstract As the climate warms, boreal fish species are expected to expand into the Arctic domain. Though water temperature is an important factor driving expansion of aquatic species, other variables may play a critical role in restricting those movements. Continuous darkness during the Arctic polar night has been suggested to impair foraging in visually searching boreal fish and may thus limit their northward expansion. We discuss feeding and diet composition of co-existing polar cod ( Boreogadus saida ), Atlantic cod ( Gadus morhua ), and haddock ( Melanogrammus aeglefinus ) during the polar night. The data presented cover January sampling during five consecutive years (2012–2016) in Svalbard fjords (78–80°N). Across species, more than 70% of individuals were feeding. Few stomachs were well filled, suggesting an overall moderate foraging activity or success. The endemic polar cod had the highest frequency of empty stomachs (40%), while Atlantic cod (25% empty) and haddock (21% empty) had fed most extensively. Diet composition indicated opportunistic feeding, with extensive diet overlap of the most abundant prey species (krill, Thysanoessa spp.) during years of highly abundant krill (2014–2015) but reverting to more distinct diets in a year (2016) with lower krill abundance. For all three species, presence of prey items in advanced degrees of digestion indicated feeding activity prior to each annual trawl sampling. The stomach fullness and diet overlap suggest that coexisting and similar sized gadoids feed on the same available prey resources during polar night.

Long-Term Influence of PCB- and PBDE-Spiked Microplastic Spheres Fed through Rotifers to Atlantic Cod (Gadus morhua) Larvae

Abstract: Omnipresent microplastics (MPs) in marine ecosystems are ingested at all trophic levels and may be a vector for the transfer of persistent organic pollutants (POPs) through the food web. We fed rotifers polyethylene MPs (1–4 µm) spiked with seven congeners of polychlorinated biphenyls (PCBs) and two congeners of polybrominated diphenyl ethers (PBDEs). In turn, these rotifers were fed to cod larvae from 2–30 days post-hatching (dph), while the control groups were fed rotifers without MPs. After 30 dph, all the groups were fed the same feed without MPs. Whole-body larvae were sampled at 30 and 60 dph, and four months later the skin of 10 g juveniles was sampled. The PCBs and PBDEs concentrations were significantly higher in MP larvae compared to the control larvae at 30 dph, but the significance dissipated at 60 dph. Expression of stress-related genes in cod larvae at 30 and 60 dph showed inconclusive minor random effects. The skin of MP juveniles showed disrupted epithelial integrity, fewer club cells and downregulation of a suite of genes involved in immunity, metabolism and the development of skin. Our study showed that POPs were transferred through the food web and accumulated in the larvae, but that the level of pollutants decreased once the exposure was ceased, possibly related to growth dilution. Considering the transcriptomic and histological findings, POPs spiked to MPs and/or MPs themselves may have long-term effects in the skin barrier defense system, immune response and epithelium integrity, which may potentially reduce the robustness and overall fitness of the fish.

Microplastics assessment in Arabian Sea fishes: accumulation, characterization, and method development.

Abstract: Around the globe, plastic has been entering the aquatic system and is ingested by organisms. Identification, optimal digestion method, and characterization of the polymers to trace sources are of growing importance. Hence, the present work investigated microplastics accumulation, digestion protocol efficiency, and characterization of polymers with FTIR analysis in the guts of five fishes (Lethrinus nebulosus, Rastrelliger kanagurta, Acanthopagrus arabicus, Otolithes ruber, and Euryglossa orientalis) from the Karachi coastal area, Arabian Sea. A total of 1154 microplastics (MPs) were ingested by 29 out of 33 fish species (87%). The highest average MP/fish was recorded in Otolithes ruber (54) and the lowest in Rastrelliger kanagurta (19.42). Microfibers were the most abundant shape with the highest numbers (35.52%) as compared to the rest of the MPs identified. Transparent microfibers were recorded as the highest in numbers followed by red, black, blue, and green. In this study, KOH with different concentrations and exposure times along with oxidizing agent hydrogen peroxide was tested (Protocols 3 and 4). Results showed these bases were highly efficient in obtaining optimal digestion of the samples. FTIR analysis confirmed that the majority of the polymers found in the fish guts were polyethylene and polypropylene. This study validated for the first time the presence of these polymers of plastic in marine fish from Pakistan.

Application of the machine learning method to estimate the biomass of pacific cod in the North Kuril zone

Abstract: The biomass of pacific cod (Gadus macrocephalus) in the North Kuril fishing zone is estimated using a multifactorial approach, with evaluation of uncertainty. For this purpose, the density of fish over entire zone is restored using the data on density obtained in 2022 compared with the data of previous surveys and fishery data obtained in 2021 and earlier, converted to the same scale, with application of the machine learning method, as the random forest in the multiple imputation by chained equations procedure (MICE). The coefficient of the restored data determination with out-of-bag (test set) data was > 0.8 with the data of scientific survey in 2021 and > 0.5 with the data of Danish seine observations. The cod density variance in MICE data was in 82 % lower than in the data of the scientific survey; therefore the biomass estimation with MICE data has lower uncertainty than that one calculated just from the mean density in survey. The study showed insignificant difference of the cod biomass in 2021 and 2022. Spatial segregation is revealed for fishing gears used for the pacific cod fishery. There is proposed to extend the list of fishing gears and to expand the study area for reducing possible bias in the biomass estimation due to large area of extrapolation.

Bioenergetics modelling of growth processes in parasitized Eastern Baltic cod (Gadus morhua L.)

Abstract: Abstract Changes in physiological processes can reveal how individuals respond to environmental stressors. It can be difficult to link physiological responses to changes in vital rates such as growth, reproduction and survival. Here, bioenergetics modelling can aid in understanding non-intuitive outcomes from stressor combinations. Building on an established bioenergetics model, we examine the potential effects of parasite infection on growth rate and body condition. Parasites represent an overlooked biotic factor, despite their known effects on the physiology of the host organism. As a case study, we use the host–parasite system of Eastern Baltic cod (Gadus morhua) infected with the parasitic nematode Contraceacum osculatum. Eastern Baltic cod have during the past decade experienced increasing infection loads with C. osculatum that have been shown to lead to physiological changes. We hypothesized that infection with parasites affects cod growth negatively as previous studies reveal that the infections lead to reduced energy turnover, severe liver disease and reduced nutritional condition. To test this, we implemented new variables into the bioenergetics model representing the physiological changes in infected fish and parameterized these based on previous experimental data. We found that growth rate and body condition decreased with increased infection load. Highly infected cod reach a point of no return where their energy intake cannot maintain a surplus energy balance, which may eventually lead to induced mortality. In conclusion, parasite infections cannot be ignored when assessing drivers of fish stock dynamics.