A
Alexander Kozik
Researcher at University of California, Davis
Publications - 52
Citations - 5693
Alexander Kozik is an academic researcher from University of California, Davis. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 32, co-authored 52 publications receiving 5003 citations. Previous affiliations of Alexander Kozik include University of California, Berkeley & University of California.
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Journal ArticleDOI
Genome-Wide Analysis of NBS-LRR–Encoding Genes in Arabidopsis
TL;DR: The observed diversity of these NBS-LRR proteins indicates the variety of recognition molecules available in an individual genotype to detect diverse biotic challenges.
Journal ArticleDOI
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.
David J. Bertioli,David J. Bertioli,Steven B. Cannon,Lutz Froenicke,Guodong Huang,Andrew Farmer,Ethalinda K. S. Cannon,Xin Liu,Dongying Gao,Josh Clevenger,Sudhansu Dash,Longhui Ren,Márcio C. Moretzsohn,Kenta Shirasawa,Wei Huang,Bruna Vidigal,Bruna Vidigal,Brian Abernathy,Ye Chu,Chad E. Niederhuth,Pooja E. Umale,Ana Claudia Guerra Araujo,Alexander Kozik,Kyung Do Kim,Mark D. Burow,Mark D. Burow,Rajeev K. Varshney,Xingjun Wang,Xinyou Zhang,Noelle A. Barkley,Noelle A. Barkley,Patricia M. Guimarães,Sachiko Isobe,Baozhu Guo,Boshou Liao,H. Thomas Stalker,Robert J. Schmitz,Brian E. Scheffler,Soraya C. M. Leal-Bertioli,Soraya C. M. Leal-Bertioli,Xu Xun,Scott A. Jackson,Richard W Michelmore,Peggy Ozias-Akins +43 more
TL;DR: The genome sequences of its diploid ancestors are reported to show that these genomes are similar to cultivated peanut's A and B subgenomes and used to identify candidate disease resistance genes, to guide tetraploid transcript assemblies and to detect genetic exchange between cultivated peanuts' subgenome.
Journal ArticleDOI
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years
Michael S. Barker,Nolan C. Kane,Nolan C. Kane,Marta Matvienko,Alexander Kozik,Richard W Michelmore,Steven J. Knapp,Loren H. Rieseberg,Loren H. Rieseberg +8 more
TL;DR: It is suggested that paleopolyploidy can yield strikingly consistent signatures of gene retention in plant genomes despite extensive lineage radiations and recurrent genome duplications but that these patterns vary substantially among higher taxonomic categories.
Journal ArticleDOI
Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.
Sebastian Reyes-Chin-Wo,Zhiwen Wang,Xinhua Yang,Alexander Kozik,Siwaret Arikit,Chi Song,Liangfeng Xia,Lutz Froenicke,Dean Lavelle,Maria Jose Truco,Rui Xia,Shilin Zhu,Chunyan Xu,Huaqin Xu,Xun Xu,Kyle Cox,Ian F Korf,Blake C. Meyers,Blake C. Meyers,Richard W Michelmore +19 more
TL;DR: This work identifies several genomic features that may have contributed to the success of the Compositae family of flowering plants, including genes encoding Cycloidea-like transcription factors, kinases, enzymes involved in rubber biosynthesis and disease resistance proteins that are expanded in the genome.
Journal ArticleDOI
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.
Dario Cantu,Manjula Govindarajulu,Alexander Kozik,Meinan Wang,Xianming Chen,Xianming Chen,Kenji K. Kojima,Jerzy Jurka,Richard W Michelmore,Jorge Dubcovsky,Jorge Dubcovsky,Jorge Dubcovsky +11 more
TL;DR: Cantu et al. as discussed by the authors used Illumina sequencing to rapidly access the genomic sequence of the highly virulent PST race 130 (PST-130), which was assembled into 29,178 contigs (64.8 Mb).