D
Dongying Gao
Researcher at University of Georgia
Publications - 38
Citations - 3398
Dongying Gao is an academic researcher from University of Georgia. The author has contributed to research in topics: Genome & Retrotransposon. The author has an hindex of 18, co-authored 32 publications receiving 2535 citations. Previous affiliations of Dongying Gao include Michigan State University & Purdue University.
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Journal ArticleDOI
A reference genome for common bean and genome-wide analysis of dual domestications
Jeremy Schmutz,Phillip E. McClean,Sujan Mamidi,G Albert Wu,Steven B. Cannon,Jane Grimwood,Jerry Jenkins,Shengqiang Shu,Qijian Song,Carolina Chavarro,Mirayda Torres-Torres,Valérie Geffroy,Samira Mafi Moghaddam,Dongying Gao,Brian Abernathy,Kerrie Barry,Matthew W. Blair,Mark A. Brick,Mansi Chovatia,Paul Gepts,David Goodstein,Michael D. Gonzales,Uffe Hellsten,David L. Hyten,Gaofeng Jia,James D. Kelly,Dave Kudrna,Rian Lee,Manon M.S. Richard,Phillip N. Miklas,Juan M. Osorno,Josiane Rodrigues,Vincent Thareau,Carlos A. Urrea,Mei Wang,Yeisoo Yu,Ming Zhang,Rod A. Wing,Perry B. Cregan,Daniel S. Rokhsar,Scott A. Jackson +40 more
TL;DR: 2 independent domestications from genetic pools that diverged before human colonization are confirmed and a set of genes linked with increased leaf and seed size are identified and combined with quantitative trait locus data from Mesoamerican cultivars.
Journal ArticleDOI
The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut.
David J. Bertioli,David J. Bertioli,Steven B. Cannon,Lutz Froenicke,Guodong Huang,Andrew Farmer,Ethalinda K. S. Cannon,Xin Liu,Dongying Gao,Josh Clevenger,Sudhansu Dash,Longhui Ren,Márcio C. Moretzsohn,Kenta Shirasawa,Wei Huang,Bruna Vidigal,Bruna Vidigal,Brian Abernathy,Ye Chu,Chad E. Niederhuth,Pooja E. Umale,Ana Claudia Guerra Araujo,Alexander Kozik,Kyung Do Kim,Mark D. Burow,Mark D. Burow,Rajeev K. Varshney,Xingjun Wang,Xinyou Zhang,Noelle A. Barkley,Noelle A. Barkley,Patricia M. Guimarães,Sachiko Isobe,Baozhu Guo,Boshou Liao,H. Thomas Stalker,Robert J. Schmitz,Brian E. Scheffler,Soraya C. M. Leal-Bertioli,Soraya C. M. Leal-Bertioli,Xu Xun,Scott A. Jackson,Richard W Michelmore,Peggy Ozias-Akins +43 more
TL;DR: The genome sequences of its diploid ancestors are reported to show that these genomes are similar to cultivated peanut's A and B subgenomes and used to identify candidate disease resistance genes, to guide tetraploid transcript assemblies and to detect genetic exchange between cultivated peanuts' subgenome.
Journal ArticleDOI
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
Joshua C. Stein,Yeisoo Yu,Dario Copetti,Dario Copetti,Derrick J. Zwickl,Li Zhang,Chengjun Zhang,Kapeel Chougule,Kapeel Chougule,Dongying Gao,Aiko Iwata,Jose Luis Goicoechea,Sharon Wei,Jun Wang,Yi Liao,Muhua Wang,Muhua Wang,Julie Jacquemin,Julie Jacquemin,Claude Becker,Dave Kudrna,Jianwei Zhang,Carlos E.M. Londono,Xiang Song,Seunghee Lee,Paul L. Sanchez,Paul L. Sanchez,Andrea Zuccolo,Andrea Zuccolo,Jetty S.S. Ammiraju,Jetty S.S. Ammiraju,Jayson Talag,Ann Danowitz,Luis F. Rivera,Andrea R. Gschwend,Christos Noutsos,Cheng chieh Wu,Cheng chieh Wu,Shu-Min Kao,Shu-Min Kao,Jhih wun Zeng,Fu Jin Wei,Qiang Zhao,Qi Feng,Moaine El Baidouri,Marie-Christine Carpentier,Eric Lasserre,Richard Cooke,Daniel da Rosa Farias,Luciano Carlos da Maia,Railson Schreinert dos Santos,Kevin G. Nyberg,Kenneth L. McNally,Ramil Mauleon,Nickolai Alexandrov,Jeremy Schmutz,Dave Flowers,Chuanzhu Fan,Detlef Weigel,Kshirod K. Jena,Thomas Wicker,Mingsheng Chen,Bin Han,Robert J Henry,Yue-Ie C. Hsing,Nori Kurata,Antonio Costa de Oliveira,Olivier Panaud,Scott A. Jackson,Carlos A. Machado,Michael J. Sanderson,Manyuan Long,Doreen Ware,Doreen Ware,Rod A. Wing,Rod A. Wing +75 more
TL;DR: This study resolves controversial areas of the Oryza phylogeny, showing a complex history of introgression among different chromosomes in the young ‘AA’ subclade containing the two domesticated species and announcing many new haplotypes of potential use for future crop protection.
Journal ArticleDOI
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
David J. Bertioli,Jerry Jenkins,Josh Clevenger,Olga Dudchenko,Dongying Gao,Guillermo Seijo,Soraya C. M. Leal-Bertioli,Longhui Ren,Andrew Farmer,Manish K. Pandey,Sergio Sebastián Samoluk,Brian Abernathy,Gaurav Agarwal,Carolina Ballén-Taborda,Connor Cameron,Jacqueline D. Campbell,Carolina Chavarro,Annapurna Chitikineni,Ye Chu,Sudhansu Dash,Moaine El Baidouri,Moaine El Baidouri,Baozhu Guo,Wei Huang,Kyung Do Kim,Kyung Do Kim,Walid Korani,Sophie Lanciano,Sophie Lanciano,Christopher Lui,Marie Mirouze,Marie Mirouze,Márcio C. Moretzsohn,Melanie Pham,Jin Hee Shin,Jin Hee Shin,Kenta Shirasawa,Senjuti Sinharoy,Avinash Sreedasyam,Nathan T. Weeks,Xinyou Zhang,Zheng Zheng,Ziqi Sun,Lutz Froenicke,Erez Lieberman Aiden,Richard W Michelmore,Rajeev K. Varshney,C. Corley Holbrook,Ethalinda K. S. Cannon,Brian E. Scheffler,Jane Grimwood,Peggy Ozias-Akins,Steven B. Cannon,Scott A. Jackson,Jeremy Schmutz +54 more
TL;DR: The genome sequence of segmental allotetraploid peanut is reported and suggests that diversity generated by genetic deletions and homeologous recombination helped to favor the domestication of Arachis hypogaea over its diploid relatives.
Journal ArticleDOI
Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
Jinfeng Chen,Quanfei Huang,Dongying Gao,Junyi Wang,Yongshan Lang,Tieyan Liu,Bo Li,Zetao Bai,Jose Luis Goicoechea,Chengzhi Liang,Chengbin Chen,Wenli Zhang,Shouhong Sun,Yi Liao,Xuemei Zhang,Lu Yang,Chengli Song,Meijiao Wang,Jinfeng Shi,Geng Liu,Junjie Liu,Heling Zhou,Weili Zhou,Qiulin Yu,Na An,Yan Chen,Qingle Cai,Bo Wang,Binghang Liu,Jiumeng Min,Ying Huang,Honglong Wu,Zhenyu Li,Yong Zhang,Ye Yin,Wenqin Song,Jiming Jiang,Scott A. Jackson,Rod A. Wing,Jun Wang,Jun Wang,Mingsheng Chen +41 more
TL;DR: In this paper, the authors reported the 261-Mb de novo assembled genome sequence of Oryza brachyantha and analyzed the breakpoints of non-collinear genes.