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Amir Szitenberg
Researcher at University of Hull
Publications - 32
Citations - 842
Amir Szitenberg is an academic researcher from University of Hull. The author has contributed to research in topics: Genome & Holobiont. The author has an hindex of 14, co-authored 31 publications receiving 615 citations. Previous affiliations of Amir Szitenberg include Ben-Gurion University of the Negev & Tel Aviv University.
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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
Sebastian Eves-van den Akker,Dominik R. Laetsch,Peter Thorpe,Catherine J. Lilley,Etienne Danchin,Martine Da Rocha,Corinne Rancurel,Nancy Holroyd,James Cotton,Amir Szitenberg,Eric Grenier,Josselin Montarry,Benjamin Mimee,Marc-Olivier Duceppe,Ian Boyes,Jessica Marvin,Laura M. Jones,Hazijah Yusup,Joël Lafond-Lapalme,Magali Esquibet,Michael Sabeh,Michael Rott,Hein Overmars,A.M. Finkers-Tomczak,Geert Smant,Georgios Koutsovoulos,Vivian C. Blok,Sophie Mantelin,Peter J. A. Cock,Wendy S. Phillips,Bernard Henrissat,Bernard Henrissat,Peter E. Urwin,Mark Blaxter,John T. Jones,John T. Jones +35 more
TL;DR: In this paper, a high quality genome assembly for Globodera rostochiensis was generated, identifying putative effectors and horizontal gene transfer events, map gene expression through the life cycle focusing on key parasitic transitions and sequence the genomes of eight populations including four additional pathotypes to identify variation.
Data from: The genome of the yellow potato cyst nematode Globodera rostochiensis reveals insights into the basis of parasitism and virulence
Sebastian Eves-van den Akker,Dominik R. Laetsch,Peter Thorpe,Catherine J. Lilley,Etienne Danchin,Rocha, Da, Martine,Corinne Rancurel,Nancy Holroyd,James Cotton,Amir Szitenberg,Eric Grenier,Josselin Montarry,Benjamin Mimee,Marc Olivier Duceppe,Ian Boyes,Jessica Marvin,Laura M. Jones,Hazijah Yusup,Joël Lafond-Lapalme,Magali Esquibet,Michael Sabeh,Michael Rott,Hein Overmars,A.M. Finkers-Tomczak,Geert Smant +24 more
TL;DR: For each gene, the authors lists the normalized expression data for each life stage, and (if significantly differentially expressed) which expression super cluster it is grouped into, for each gene.
Journal ArticleDOI
Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake
Lori Lawson Handley,Daniel S. Read,Ian J. Winfield,Helen S. Kimbell,Harriet Johnson,Jianlong Li,Christoph Hahn,Christoph Hahn,Rosetta C. Blackman,Rose Wilcox,Robert Donnelly,Amir Szitenberg,Bernd Hänfling +12 more
TL;DR: In this article, the authors carried out comprehensive spatial sampling of England's largest lake, Windermere, during summer and winter to examine repeatability of the method, compare eDNA results with contemporary gill-net survey data, test the hypothesis of greater spatial structure of eDNA in summer compared to winter due to differences in water mixing between seasons, and compare the effectiveness of shore and offshore sampling for species detection.
Journal ArticleDOI
Comparative genomics of apomictic root-knot nematodes : hybridization, ploidy, and dynamic genome change
Amir Szitenberg,Laura Salazar-Jaramillo,Vivian C. Blok,Dominik R. Laetsch,Dominik R. Laetsch,Soumi Joseph,Valerie M. Williamson,Mark Blaxter,David H. Lunt +8 more
TL;DR: The evolutionary history of the MIG genomes is revealed to be very dynamic, with noncrossover recombination both homogenizing the genomic copies, and acting as a mechanism for generating divergence between species.
Journal ArticleDOI
Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements
Amir Szitenberg,Soyeon Cha,Charles H. Opperman,David McKenzie Bird,Mark Blaxter,David H. Lunt +5 more
TL;DR: Although statistical power to detect selection is demonstrated, there is no evidence that variation in these factors influence genomic TE loads across extended periods of time, and the effects of genetic drift appear to persist and control TE variation among species.