A
Amy Chen
Researcher at Lawrence Berkeley National Laboratory
Publications - 163
Citations - 3621
Amy Chen is an academic researcher from Lawrence Berkeley National Laboratory. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 31, co-authored 163 publications receiving 3292 citations. Previous affiliations of Amy Chen include Lawrence Livermore National Laboratory & Joint Genome Institute.
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Journal ArticleDOI
Complete genome sequence of Kytococcus sedentarius type strain (541T)
David Sims,Thomas Brettin,Thomas Brettin,John C. Detter,Cliff Han,Alla Lapidus,Alex Copeland,Tijana Glavina del Rio,Matt Nolan,Feng Chen,Susan Lucas,Hope Tice,Jan Fang Cheng,David Bruce,Lynne Goodwin,Sam Pitluck,Galina Ovchinnikova,Amrita Pati,Natalia Ivanova,Konstantinos Mavromatis,Amy Chen,Krishna Palaniappan,Patrik D'haeseleer,Patrik D'haeseleer,Patrick S. G. Chain,Patrick S. G. Chain,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Susanne Schneider,Markus Göker,Rüdiger Pukall,Nikos C. Kyrpides,Hans-Peter Klenk +35 more
TL;DR: This is the first complete genome sequence of a member of the family Dermacoccaceae and the 2,785,024 bp long single replicon genome with its 2639 protein-coding and 64 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.
Journal ArticleDOI
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
Yun Juan Chang,Yun Juan Chang,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Olga Chertkov,Olga Chertkov,Tijana Glavina del Rio,Matt Nolan,Alex Copeland,Hope Tice,Jan Fang Cheng,Susan Lucas,Cliff Han,Cliff Han,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Natalia Ivanova,Galina Ovchinikova,Amrita Pati,Amy Chen,Krishna Palaniappan,Konstantinos Mavromatis,Konstantinos Liolios,Thomas Brettin,Thomas Brettin,Anne Fiebig,Manfred Rohde,Birte Abt,Markus Göker,John C. Detter,John C. Detter,Tanja Woyke,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk,Alla Lapidus +43 more
TL;DR: The Ktedonobacter racemifer corrig genome is the largest prokaryotic genome reported so far and comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance.
Journal ArticleDOI
Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T)
Markus Göker,Sabine Gronow,Ahmet Zeytun,Ahmet Zeytun,Matt Nolan,Susan Lucas,Alla Lapidus,Nancy Hammon,Shweta Deshpande,Jan Fang Cheng,Sam Pitluck,Konstantinos Liolios,Ioanna Pagani,Natalia Ivanova,Konstantinos Mavromatis,Galina Ovchinikova,Amrita Pati,Roxane Tapia,Roxane Tapia,Cliff Han,Cliff Han,Lynne Goodwin,Lynne Goodwin,Amy Chen,Krishna Palaniappan,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Cynthia D. Jeffries,Cynthia D. Jeffries,Evelyne Brambilla,Manfred Rohde,John C. Detter,John C. Detter,Tanja Woyke,James Bristow,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Jonathan A. Eisen,Jonathan A. Eisen,Nikos C. Kyrpides,Hans-Peter Klenk +43 more
TL;DR: This is the first completed genome sequence of a member of the genus Odoribacter and the fourth sequence from the family Porphyromonadaceae and is a part of the GenomicEncyclopedia of bacteria andArchaea project.
Journal ArticleDOI
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)
Tijana Glavina del Rio,Tijana Glavina del Rio,Birte Abt,Birte Abt,Stefan Spring,Stefan Spring,Alla Lapidus,Alla Lapidus,Matt Nolan,Matt Nolan,Hope Tice,Hope Tice,Alex Copeland,Alex Copeland,Jan-Fang Cheng,Jan-Fang Cheng,Feng Chen,Feng Chen,David Bruce,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Sam Pitluck,Natalia Ivanova,Natalia Ivanova,Konstantinos Mavromatis,Konstantinos Mavromatis,Natalia Mikhailova,Natalia Mikhailova,Amrita Pati,Amrita Pati,Amy Chen,Amy Chen,Krishna Palaniappan,Krishna Palaniappan,Miriam Land,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Yun Juan Chang,Cynthia D. Jeffries,Cynthia D. Jeffries,Cynthia D. Jeffries,Patrick S. G. Chain,Patrick S. G. Chain,Patrick S. G. Chain,Elizabeth Saunders,Elizabeth Saunders,John C. Detter,John C. Detter,John C. Detter,Thomas Brettin,Thomas Brettin,Thomas Brettin,Manfred Rohde,Markus Göker,Markus Göker,Jim Bristow,Jim Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Nikos Kyrpides,Nikos Kyrpides,Hans-Peter Klenk,Hans-Peter Klenk,Susan Lucas,Susan Lucas +78 more
TL;DR: This is the first complete genome sequence of a member of the family ‘Chitinophagaceae’, and the 9,127,347 bp long single replicon genome with its 7,397 protein-coding and 95 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.
Journal ArticleDOI
Complete genome sequence of Haliangium ochraceum type strain (SMP-2 T )
Natalia Ivanova,Chris Daum,Elke Lang,Birte Abt,Markus Kopitz,Elizabeth Saunders,Alla Lapidus,Susan Lucas,Tijana Glavina del Rio,Matt Nolan,Hope Tice,Alex Copeland,Jan Fang Cheng,Feng Chen,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Konstantinos Mavromatis,Amrita Pati,Natalia Mikhailova,Amy Chen,Krishna Palaniappan,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Cynthia D. Jeffries,Cynthia D. Jeffries,John C. Detter,John C. Detter,Thomas Brettin,Thomas Brettin,Manfred Rohde,Markus Göker,James Bristow,Victor Markowitz,Jonathan A. Eisen,Jonathan A. Eisen,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk +44 more
TL;DR: The features of this organism are described, together with the complete genome sequence, and annotation, and the 9,446,314 bp long single replicon genome with its 6,898 protein-coding and 53 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.