J
James Bristow
Researcher at Joint Genome Institute
Publications - 150
Citations - 4100
James Bristow is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Whole genome sequencing. The author has an hindex of 31, co-authored 150 publications receiving 3705 citations.
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Journal ArticleDOI
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
Stephen B. Goodwin,Sarrah Ben M’Barek,Braham Dhillon,Alexander H. J. Wittenberg,Charles F. Crane,James K. Hane,Andrew J Foster,Theo van der Lee,Jane Grimwood,Andrea Aerts,John F. Antoniw,Andy M. Bailey,Burt H. Bluhm,Judith Bowler,James Bristow,Ate van der Burgt,Blondy Canto-Canché,Alice C. L. Churchill,Laura Conde-Ferráez,Hans J. Cools,Pedro M. Coutinho,Michael Csukai,Paramvir S. Dehal,Pierre J. G. M. de Wit,Bruno G. G. Donzelli,Henri van de Geest,Roeland C. H. J. van Ham,Kim E. Hammond-Kosack,Bernard Henrissat,Andrzej Kilian,Adilson Kenji Kobayashi,Edda Koopmann,Yiannis A. I. Kourmpetis,Arnold Kuzniar,Erika Lindquist,Vincent Lombard,Chris Maliepaard,Natália F. Martins,Rahim Mehrabi,Jan P. H. Nap,Alisa Ponomarenko,Jason J. Rudd,Asaf Salamov,Jeremy Schmutz,Henk J. Schouten,Harris Shapiro,Ioannis Stergiopoulos,Stefano F.F. Torriani,Hank Tu,Ronald P. de Vries,Cees Waalwijk,S.B. Ware,Ad Wiebenga,L.H. Zwiers,Richard P. Oliver,Igor V. Grigoriev,Gert H. J. Kema +56 more
TL;DR: The genome of M. graminicola was sequenced completely and found that it contained very few genes for enzymes that break down plant cell walls, which was more similar to endophytes than to pathogens, which may have evolved from endophytic ancestors.
Journal ArticleDOI
Genomic characterization of methanomicrobiales reveals three classes of methanogens.
Iain Anderson,Luke E. Ulrich,Boguslaw Lupa,Dwi Susanti,Iris Porat,Sean D. Hooper,Athanasios Lykidis,Magdalena Sieprawska-Lupa,Lakshmi Dharmarajan,Eugene Goltsman,Alla Lapidus,Elizabeth Saunders,Cliff Han,Miriam Land,Susan Lucas,Biswarup Mukhopadhyay,William B. Whitman,Carl R. Woese,James Bristow,Nikos C. Kyrpides +19 more
TL;DR: The results indicate that Methanomicrobiales, rather than being similar to Class I methanogens or Methanosarcinales, share some features of both and have some unique properties.
Journal ArticleDOI
Complete genome sequence of Kytococcus sedentarius type strain (541T)
David Sims,Thomas Brettin,Thomas Brettin,John C. Detter,Cliff Han,Alla Lapidus,Alex Copeland,Tijana Glavina del Rio,Matt Nolan,Feng Chen,Susan Lucas,Hope Tice,Jan Fang Cheng,David Bruce,Lynne Goodwin,Sam Pitluck,Galina Ovchinnikova,Amrita Pati,Natalia Ivanova,Konstantinos Mavromatis,Amy Chen,Krishna Palaniappan,Patrik D'haeseleer,Patrik D'haeseleer,Patrick S. G. Chain,Patrick S. G. Chain,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Susanne Schneider,Markus Göker,Rüdiger Pukall,Nikos C. Kyrpides,Hans-Peter Klenk +35 more
TL;DR: This is the first complete genome sequence of a member of the family Dermacoccaceae and the 2,785,024 bp long single replicon genome with its 2639 protein-coding and 64 RNA genes is part of the GenomicEncyclopedia ofBacteria andArchaea project.
Journal ArticleDOI
Tenascin-X, collagen, elastin, and the Ehlers-Danlos syndrome.
TL;DR: Tenascin‐X serves as a compelling example of how human “experiments of nature” can guide us to an understanding of genes whose function may not be evident from their sequence or in vitro studies of their encoded proteins.
Journal ArticleDOI
Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
Yun Juan Chang,Yun Juan Chang,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Olga Chertkov,Olga Chertkov,Tijana Glavina del Rio,Matt Nolan,Alex Copeland,Hope Tice,Jan Fang Cheng,Susan Lucas,Cliff Han,Cliff Han,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Natalia Ivanova,Galina Ovchinikova,Amrita Pati,Amy Chen,Krishna Palaniappan,Konstantinos Mavromatis,Konstantinos Liolios,Thomas Brettin,Thomas Brettin,Anne Fiebig,Manfred Rohde,Birte Abt,Markus Göker,John C. Detter,John C. Detter,Tanja Woyke,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk,Alla Lapidus +43 more
TL;DR: The Ktedonobacter racemifer corrig genome is the largest prokaryotic genome reported so far and comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance.